Gene : Phvul.005G085200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13251 - EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 Genomic Order:  851
Name:  ? Phvul.005G085200 Secondary Identifier:  ? PAC:37152812
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G085200 0.5kb upstream 0.5kb upstream 26647 true Chr05: 22392718-22419364 Phaseolus vulgaris
Phvul.005G085200 0.5kb upstream 0.5kb upstream 500 false Chr05: 22392718-22393217 Phaseolus vulgaris
Phvul.005G085200 0.5kb downstream 0.5kb downstream 26647 true Chr05: 22393218-22419864 Phaseolus vulgaris
Phvul.005G085200 0.5kb downstream 0.5kb downstream 500 false Chr05: 22419365-22419864 Phaseolus vulgaris
Phvul.005G085200 1.0kb upstream 1.0kb upstream 27147 true Chr05: 22392218-22419364 Phaseolus vulgaris
Phvul.005G085200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 22392218-22393217 Phaseolus vulgaris
Phvul.005G085200 1.0kb downstream 1.0kb downstream 27147 true Chr05: 22393218-22420364 Phaseolus vulgaris
Phvul.005G085200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 22419365-22420364 Phaseolus vulgaris
Phvul.005G085200 2.0kb upstream 2.0kb upstream 28147 true Chr05: 22391218-22419364 Phaseolus vulgaris
Phvul.005G085200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 22391218-22393217 Phaseolus vulgaris
Phvul.005G085200 2.0kb downstream 2.0kb downstream 28147 true Chr05: 22393218-22421364 Phaseolus vulgaris
Phvul.005G085200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 22419365-22421364 Phaseolus vulgaris
Phvul.005G085200 5.0kb upstream 5.0kb upstream 31147 true Chr05: 22388218-22419364 Phaseolus vulgaris
Phvul.005G085200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 22388218-22393217 Phaseolus vulgaris
Phvul.005G085200 5.0kb downstream 5.0kb downstream 31147 true Chr05: 22393218-22424364 Phaseolus vulgaris
Phvul.005G085200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 22419365-22424364 Phaseolus vulgaris
Phvul.005G085200 10.0kb upstream 10.0kb upstream 36147 true Chr05: 22383218-22419364 Phaseolus vulgaris
Phvul.005G085200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 22383218-22393217 Phaseolus vulgaris
Phvul.005G085200 10.0kb downstream 10.0kb downstream 36147 true Chr05: 22393218-22429364 Phaseolus vulgaris
Phvul.005G085200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 22419365-22429364 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310428 5265 Fabidae View MSA
124063131 5270 Rosid View MSA
123747515 5271 Pentapetalae View MSA
122790738 5272 Eudicot View MSA
122046287 5273 Angiosperm View MSA
121348694 5274 Embryophyte View MSA
123380976 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.84153 0.0 19.7218   Low
cufflinks 19.1169 0.0 61.9135    
cufflinks 23.1527 0.0 76.999    
cufflinks 11.8191 0.0 37.6647   Low
cufflinks 21.2107 0.0 68.9224    
cufflinks 30.3657 0.0 91.7107    
cufflinks 21.3118 0.0 69.6268    
cufflinks 20.7991 0.0 68.2536    
cufflinks 26.7829 0.0 78.445    
cufflinks 27.1602 0.0 80.1565    
cufflinks 20.3199 0.0 65.7473    

0 Strain