Gene : Phvul.005G085600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR27003:SF37 - INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 PROTEIN-RELATED Genomic Order:  855
Name:  ? Phvul.005G085600 Secondary Identifier:  ? PAC:37153878
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G085600 0.5kb upstream 0.5kb upstream 3933 true Chr05: 22718084-22722016 Phaseolus vulgaris
Phvul.005G085600 0.5kb upstream 0.5kb upstream 500 false Chr05: 22718084-22718583 Phaseolus vulgaris
Phvul.005G085600 0.5kb downstream 0.5kb downstream 3933 true Chr05: 22718584-22722516 Phaseolus vulgaris
Phvul.005G085600 0.5kb downstream 0.5kb downstream 500 false Chr05: 22722017-22722516 Phaseolus vulgaris
Phvul.005G085600 1.0kb upstream 1.0kb upstream 4433 true Chr05: 22717584-22722016 Phaseolus vulgaris
Phvul.005G085600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 22717584-22718583 Phaseolus vulgaris
Phvul.005G085600 1.0kb downstream 1.0kb downstream 4433 true Chr05: 22718584-22723016 Phaseolus vulgaris
Phvul.005G085600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 22722017-22723016 Phaseolus vulgaris
Phvul.005G085600 2.0kb upstream 2.0kb upstream 5433 true Chr05: 22716584-22722016 Phaseolus vulgaris
Phvul.005G085600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 22716584-22718583 Phaseolus vulgaris
Phvul.005G085600 2.0kb downstream 2.0kb downstream 5433 true Chr05: 22718584-22724016 Phaseolus vulgaris
Phvul.005G085600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 22722017-22724016 Phaseolus vulgaris
Phvul.005G085600 5.0kb upstream 5.0kb upstream 8433 true Chr05: 22713584-22722016 Phaseolus vulgaris
Phvul.005G085600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 22713584-22718583 Phaseolus vulgaris
Phvul.005G085600 5.0kb downstream 5.0kb downstream 8433 true Chr05: 22718584-22727016 Phaseolus vulgaris
Phvul.005G085600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 22722017-22727016 Phaseolus vulgaris
Phvul.005G085600 10.0kb upstream 10.0kb upstream 13433 true Chr05: 22708584-22722016 Phaseolus vulgaris
Phvul.005G085600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 22708584-22718583 Phaseolus vulgaris
Phvul.005G085600 10.0kb downstream 10.0kb downstream 13433 true Chr05: 22718584-22732016 Phaseolus vulgaris
Phvul.005G085600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 22722017-22732016 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302468 5265 Fabidae View MSA
124062876 5270 Rosid View MSA
123741188 5271 Pentapetalae View MSA
122788497 5272 Eudicot View MSA
122046314 5273 Angiosperm View MSA
121351522 5274 Embryophyte View MSA
123382204 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.45574 0.0 6.12   Low
cufflinks 2.1088 0.0 8.23706    
cufflinks 4.01101 0.0 13.1323    
cufflinks 4.8452 0.0 15.6098    
cufflinks 2.70868 0.0 9.80568    
cufflinks 4.32721 0.0 14.023    
cufflinks 2.93406 0.0 10.3498    
cufflinks 4.19161 0.0 13.9518    
cufflinks 6.32586 0.0 19.774   High
cufflinks 1.93128 0.0 7.67547   Low
cufflinks 2.86142 0.0 10.2585    

0 Strain