Gene : Phvul.005G088400 P. vulgaris v2.1
Defline:  (1 of 1) K03883 - NADH-ubiquinone oxidoreductase chain 5 (ND5) Genomic Order:  893
Name:  ? Phvul.005G088400 Secondary Identifier:  ? PAC:37154274
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-3781 Phaseolus vulgaris pathologic  
Pvulgaris PWY-4302 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5083 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G088400 0.5kb upstream 0.5kb upstream 1700 true Chr05: 26071808-26073507 Phaseolus vulgaris
Phvul.005G088400 0.5kb upstream 0.5kb upstream 500 false Chr05: 26071808-26072307 Phaseolus vulgaris
Phvul.005G088400 0.5kb downstream 0.5kb downstream 1700 true Chr05: 26072308-26074007 Phaseolus vulgaris
Phvul.005G088400 0.5kb downstream 0.5kb downstream 500 false Chr05: 26073508-26074007 Phaseolus vulgaris
Phvul.005G088400 1.0kb upstream 1.0kb upstream 2200 true Chr05: 26071308-26073507 Phaseolus vulgaris
Phvul.005G088400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 26071308-26072307 Phaseolus vulgaris
Phvul.005G088400 1.0kb downstream 1.0kb downstream 2200 true Chr05: 26072308-26074507 Phaseolus vulgaris
Phvul.005G088400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 26073508-26074507 Phaseolus vulgaris
Phvul.005G088400 2.0kb upstream 2.0kb upstream 3200 true Chr05: 26070308-26073507 Phaseolus vulgaris
Phvul.005G088400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 26070308-26072307 Phaseolus vulgaris
Phvul.005G088400 2.0kb downstream 2.0kb downstream 3200 true Chr05: 26072308-26075507 Phaseolus vulgaris
Phvul.005G088400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 26073508-26075507 Phaseolus vulgaris
Phvul.005G088400 5.0kb upstream 5.0kb upstream 6200 true Chr05: 26067308-26073507 Phaseolus vulgaris
Phvul.005G088400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 26067308-26072307 Phaseolus vulgaris
Phvul.005G088400 5.0kb downstream 5.0kb downstream 6200 true Chr05: 26072308-26078507 Phaseolus vulgaris
Phvul.005G088400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 26073508-26078507 Phaseolus vulgaris
Phvul.005G088400 10.0kb upstream 10.0kb upstream 11200 true Chr05: 26062308-26073507 Phaseolus vulgaris
Phvul.005G088400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 26062308-26072307 Phaseolus vulgaris
Phvul.005G088400 10.0kb downstream 10.0kb downstream 11200 true Chr05: 26072308-26083507 Phaseolus vulgaris
Phvul.005G088400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 26073508-26083507 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251788 5265 Fabidae Singleton cluster - no MSA
124072992 5270 Rosid View MSA
123753255 5271 Pentapetalae View MSA
122797410 5272 Eudicot View MSA
122049707 5273 Angiosperm View MSA
121351606 5274 Embryophyte View MSA
123428700 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.62122 0.0 8.67297    
cufflinks 1.88544 0.0 6.49922   Low
cufflinks 4.78476 0.0 14.8094    
cufflinks 12.3947 0.0 34.7401   High
cufflinks 5.15017 0.0 15.8759    
cufflinks 11.2708 0.0 31.7824   High
cufflinks 2.39371 0.0 8.04154   Low
cufflinks 7.26263 0.0 21.3923    
cufflinks 4.68188 0.0 14.6575    
cufflinks 4.62058 0.0 14.3726    
cufflinks 2.77427 0.0 9.18902    

0 Strain