Gene : Phvul.007G223200 P. vulgaris v2.1
Defline:  (1 of 4) PTHR15921 - PRE-MRNA CLEAVAGE COMPLEX II Genomic Order:  2090
Name:  ? Phvul.007G223200 Secondary Identifier:  ? PAC:37166055
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G223200 0.5kb upstream 0.5kb upstream 9252 true Chr07: 34647150-34656401 Phaseolus vulgaris
Phvul.007G223200 0.5kb upstream 0.5kb upstream 500 false Chr07: 34655902-34656401 Phaseolus vulgaris
Phvul.007G223200 0.5kb downstream 0.5kb downstream 9252 true Chr07: 34646650-34655901 Phaseolus vulgaris
Phvul.007G223200 0.5kb downstream 0.5kb downstream 500 false Chr07: 34646650-34647149 Phaseolus vulgaris
Phvul.007G223200 1.0kb upstream 1.0kb upstream 9752 true Chr07: 34647150-34656901 Phaseolus vulgaris
Phvul.007G223200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 34655902-34656901 Phaseolus vulgaris
Phvul.007G223200 1.0kb downstream 1.0kb downstream 9752 true Chr07: 34646150-34655901 Phaseolus vulgaris
Phvul.007G223200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 34646150-34647149 Phaseolus vulgaris
Phvul.007G223200 2.0kb upstream 2.0kb upstream 10752 true Chr07: 34647150-34657901 Phaseolus vulgaris
Phvul.007G223200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 34655902-34657901 Phaseolus vulgaris
Phvul.007G223200 2.0kb downstream 2.0kb downstream 10752 true Chr07: 34645150-34655901 Phaseolus vulgaris
Phvul.007G223200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 34645150-34647149 Phaseolus vulgaris
Phvul.007G223200 5.0kb upstream 5.0kb upstream 13752 true Chr07: 34647150-34660901 Phaseolus vulgaris
Phvul.007G223200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 34655902-34660901 Phaseolus vulgaris
Phvul.007G223200 5.0kb downstream 5.0kb downstream 13752 true Chr07: 34642150-34655901 Phaseolus vulgaris
Phvul.007G223200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 34642150-34647149 Phaseolus vulgaris
Phvul.007G223200 10.0kb upstream 10.0kb upstream 18752 true Chr07: 34647150-34665901 Phaseolus vulgaris
Phvul.007G223200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 34655902-34665901 Phaseolus vulgaris
Phvul.007G223200 10.0kb downstream 10.0kb downstream 18752 true Chr07: 34637150-34655901 Phaseolus vulgaris
Phvul.007G223200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 34637150-34647149 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253718 5265 Fabidae View MSA
124072237 5270 Rosid View MSA
123741427 5271 Pentapetalae View MSA
122796233 5272 Eudicot View MSA
122048698 5273 Angiosperm View MSA
121349751 5274 Embryophyte View MSA
123426332 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.05823 0.0 22.7603   Low
cufflinks 6.35071 0.0 39.2467    
cufflinks 7.11638 0.0 31.6415    
cufflinks 4.3519 0.0 51.1122   Low
cufflinks 7.65956 0.0 38.1715    
cufflinks 6.36804 0.0 29.6543    
cufflinks 9.07594 0.0 52.7127    
cufflinks 8.99006 0.0 60.1682    
cufflinks 9.10349 0.0 52.0786    
cufflinks 11.4168 0.0 68.7835   High
cufflinks 6.12268 0.0 35.2427    

0 Strain