Gene : Phvul.005G078300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR33510:SF2 - PROTEIN TIC 20-IV, CHLOROPLASTIC Genomic Order:  788
Name:  ? Phvul.005G078300 Secondary Identifier:  ? PAC:37153108
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G078300 0.5kb upstream 0.5kb upstream 3921 true Chr05: 19114663-19118583 Phaseolus vulgaris
Phvul.005G078300 0.5kb upstream 0.5kb upstream 500 false Chr05: 19114663-19115162 Phaseolus vulgaris
Phvul.005G078300 0.5kb downstream 0.5kb downstream 3921 true Chr05: 19115163-19119083 Phaseolus vulgaris
Phvul.005G078300 0.5kb downstream 0.5kb downstream 500 false Chr05: 19118584-19119083 Phaseolus vulgaris
Phvul.005G078300 1.0kb upstream 1.0kb upstream 4421 true Chr05: 19114163-19118583 Phaseolus vulgaris
Phvul.005G078300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 19114163-19115162 Phaseolus vulgaris
Phvul.005G078300 1.0kb downstream 1.0kb downstream 4421 true Chr05: 19115163-19119583 Phaseolus vulgaris
Phvul.005G078300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 19118584-19119583 Phaseolus vulgaris
Phvul.005G078300 2.0kb upstream 2.0kb upstream 5421 true Chr05: 19113163-19118583 Phaseolus vulgaris
Phvul.005G078300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 19113163-19115162 Phaseolus vulgaris
Phvul.005G078300 2.0kb downstream 2.0kb downstream 5421 true Chr05: 19115163-19120583 Phaseolus vulgaris
Phvul.005G078300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 19118584-19120583 Phaseolus vulgaris
Phvul.005G078300 5.0kb upstream 5.0kb upstream 8421 true Chr05: 19110163-19118583 Phaseolus vulgaris
Phvul.005G078300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 19110163-19115162 Phaseolus vulgaris
Phvul.005G078300 5.0kb downstream 5.0kb downstream 8421 true Chr05: 19115163-19123583 Phaseolus vulgaris
Phvul.005G078300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 19118584-19123583 Phaseolus vulgaris
Phvul.005G078300 10.0kb upstream 10.0kb upstream 13421 true Chr05: 19105163-19118583 Phaseolus vulgaris
Phvul.005G078300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 19105163-19115162 Phaseolus vulgaris
Phvul.005G078300 10.0kb downstream 10.0kb downstream 13421 true Chr05: 19115163-19128583 Phaseolus vulgaris
Phvul.005G078300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 19118584-19128583 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254031 5265 Fabidae View MSA
124062125 5270 Rosid View MSA
123738974 5271 Pentapetalae View MSA
122790107 5272 Eudicot View MSA
122051187 5273 Angiosperm View MSA
121344668 5274 Embryophyte View MSA
123427529 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.2097 0.0 74.5229   High
cufflinks 16.367 0.0 52.2339    
cufflinks 8.69926 0.0 35.9909    
cufflinks 20.3478 0.0 63.3287   High
cufflinks 8.94327 0.0 37.6512    
cufflinks 8.87353 0.0 32.0954    
cufflinks 9.22869 0.0 38.2877    
cufflinks 13.1995 0.0 43.4173    
cufflinks 6.92298 0.0 22.174   Low
cufflinks 11.9645 0.0 46.153    
cufflinks 9.32941 0.0 38.7615    

0 Strain