Gene : Phvul.007G224100 P. vulgaris v2.1
Defline:  (1 of 1) 2.4.99.12 - Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase / Lipid IV(A) KDO transferase Genomic Order:  2099
Name:  ? Phvul.007G224100 Secondary Identifier:  ? PAC:37164594
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris KDOSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G224100 0.5kb upstream 0.5kb upstream 5671 true Chr07: 34773798-34779468 Phaseolus vulgaris
Phvul.007G224100 0.5kb upstream 0.5kb upstream 500 false Chr07: 34773798-34774297 Phaseolus vulgaris
Phvul.007G224100 0.5kb downstream 0.5kb downstream 5671 true Chr07: 34774298-34779968 Phaseolus vulgaris
Phvul.007G224100 0.5kb downstream 0.5kb downstream 500 false Chr07: 34779469-34779968 Phaseolus vulgaris
Phvul.007G224100 1.0kb upstream 1.0kb upstream 6171 true Chr07: 34773298-34779468 Phaseolus vulgaris
Phvul.007G224100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 34773298-34774297 Phaseolus vulgaris
Phvul.007G224100 1.0kb downstream 1.0kb downstream 6171 true Chr07: 34774298-34780468 Phaseolus vulgaris
Phvul.007G224100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 34779469-34780468 Phaseolus vulgaris
Phvul.007G224100 2.0kb upstream 2.0kb upstream 7171 true Chr07: 34772298-34779468 Phaseolus vulgaris
Phvul.007G224100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 34772298-34774297 Phaseolus vulgaris
Phvul.007G224100 2.0kb downstream 2.0kb downstream 7171 true Chr07: 34774298-34781468 Phaseolus vulgaris
Phvul.007G224100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 34779469-34781468 Phaseolus vulgaris
Phvul.007G224100 5.0kb upstream 5.0kb upstream 10171 true Chr07: 34769298-34779468 Phaseolus vulgaris
Phvul.007G224100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 34769298-34774297 Phaseolus vulgaris
Phvul.007G224100 5.0kb downstream 5.0kb downstream 10171 true Chr07: 34774298-34784468 Phaseolus vulgaris
Phvul.007G224100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 34779469-34784468 Phaseolus vulgaris
Phvul.007G224100 10.0kb upstream 10.0kb upstream 15171 true Chr07: 34764298-34779468 Phaseolus vulgaris
Phvul.007G224100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 34764298-34774297 Phaseolus vulgaris
Phvul.007G224100 10.0kb downstream 10.0kb downstream 15171 true Chr07: 34774298-34789468 Phaseolus vulgaris
Phvul.007G224100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 34779469-34789468 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305101 5265 Fabidae View MSA
124064068 5270 Rosid View MSA
123737995 5271 Pentapetalae View MSA
122793703 5272 Eudicot View MSA
122042607 5273 Angiosperm View MSA
121344444 5274 Embryophyte View MSA
123380045 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.654693 0.0 2.37759   Low
cufflinks 1.00052 0.0 3.49139    
cufflinks 1.82276 0.0 5.91774   High
cufflinks 0.785079 0.0 2.82122   Low
cufflinks 1.28069 0.0 4.36591    
cufflinks 1.59757 0.0 5.28958    
cufflinks 1.505 0.0 5.01813    
cufflinks 1.7738 0.0 5.75893   High
cufflinks 1.08631 0.0 3.76885    
cufflinks 1.19655 0.0 4.08875    
cufflinks 0.790137 0.0 2.83255   Low

0 Strain