Gene : Phvul.005G069500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR33785:SF1 - GENOMIC DNA, CHROMOSOME 3, BAC CLONE:F4B12 Genomic Order:  696
Name:  ? Phvul.005G069500 Secondary Identifier:  ? PAC:37153209
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G069500 0.5kb upstream 0.5kb upstream 2144 true Chr05: 12168563-12170706 Phaseolus vulgaris
Phvul.005G069500 0.5kb upstream 0.5kb upstream 500 false Chr05: 12170207-12170706 Phaseolus vulgaris
Phvul.005G069500 0.5kb downstream 0.5kb downstream 2144 true Chr05: 12168063-12170206 Phaseolus vulgaris
Phvul.005G069500 0.5kb downstream 0.5kb downstream 500 false Chr05: 12168063-12168562 Phaseolus vulgaris
Phvul.005G069500 1.0kb upstream 1.0kb upstream 2644 true Chr05: 12168563-12171206 Phaseolus vulgaris
Phvul.005G069500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 12170207-12171206 Phaseolus vulgaris
Phvul.005G069500 1.0kb downstream 1.0kb downstream 2644 true Chr05: 12167563-12170206 Phaseolus vulgaris
Phvul.005G069500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 12167563-12168562 Phaseolus vulgaris
Phvul.005G069500 2.0kb upstream 2.0kb upstream 3644 true Chr05: 12168563-12172206 Phaseolus vulgaris
Phvul.005G069500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 12170207-12172206 Phaseolus vulgaris
Phvul.005G069500 2.0kb downstream 2.0kb downstream 3644 true Chr05: 12166563-12170206 Phaseolus vulgaris
Phvul.005G069500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 12166563-12168562 Phaseolus vulgaris
Phvul.005G069500 5.0kb upstream 5.0kb upstream 6644 true Chr05: 12168563-12175206 Phaseolus vulgaris
Phvul.005G069500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 12170207-12175206 Phaseolus vulgaris
Phvul.005G069500 5.0kb downstream 5.0kb downstream 6644 true Chr05: 12163563-12170206 Phaseolus vulgaris
Phvul.005G069500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 12163563-12168562 Phaseolus vulgaris
Phvul.005G069500 10.0kb upstream 10.0kb upstream 11644 true Chr05: 12168563-12180206 Phaseolus vulgaris
Phvul.005G069500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 12170207-12180206 Phaseolus vulgaris
Phvul.005G069500 10.0kb downstream 10.0kb downstream 11644 true Chr05: 12158563-12170206 Phaseolus vulgaris
Phvul.005G069500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 12158563-12168562 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301879 5265 Fabidae View MSA
124063782 5270 Rosid View MSA
123750914 5271 Pentapetalae View MSA
122795249 5272 Eudicot View MSA
122048968 5273 Angiosperm View MSA
121350568 5274 Embryophyte View MSA
123381799 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.24208 0.0 7.31275    
cufflinks 1.81119 0.0 6.04077   Low
cufflinks 12.2753 0.0 33.215   High
cufflinks 10.3535 0.0 28.6905   High
cufflinks 3.09453 0.0 9.79994    
cufflinks 5.31506 0.0 15.6176    
cufflinks 4.80975 0.0 14.2605    
cufflinks 7.28255 0.0 20.5972    
cufflinks 11.5365 0.0 31.3781   High
cufflinks 1.42782 0.0 4.91513   Low
cufflinks 2.3284 0.0 7.59206    

0 Strain