Gene : Phvul.005G072500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR32219:SF2 - PROTON PUMP-INTERACTOR 1-RELATED Genomic Order:  817
Name:  ? Phvul.005G072500 Secondary Identifier:  ? PAC:37153969
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G072500 0.5kb upstream 0.5kb upstream 4717 true Chr05: 20814716-20819432 Phaseolus vulgaris
Phvul.005G072500 0.5kb upstream 0.5kb upstream 500 false Chr05: 20814716-20815215 Phaseolus vulgaris
Phvul.005G072500 0.5kb downstream 0.5kb downstream 4717 true Chr05: 20815216-20819932 Phaseolus vulgaris
Phvul.005G072500 0.5kb downstream 0.5kb downstream 500 false Chr05: 20819433-20819932 Phaseolus vulgaris
Phvul.005G072500 1.0kb upstream 1.0kb upstream 5217 true Chr05: 20814216-20819432 Phaseolus vulgaris
Phvul.005G072500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 20814216-20815215 Phaseolus vulgaris
Phvul.005G072500 1.0kb downstream 1.0kb downstream 5217 true Chr05: 20815216-20820432 Phaseolus vulgaris
Phvul.005G072500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 20819433-20820432 Phaseolus vulgaris
Phvul.005G072500 2.0kb upstream 2.0kb upstream 6217 true Chr05: 20813216-20819432 Phaseolus vulgaris
Phvul.005G072500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 20813216-20815215 Phaseolus vulgaris
Phvul.005G072500 2.0kb downstream 2.0kb downstream 6217 true Chr05: 20815216-20821432 Phaseolus vulgaris
Phvul.005G072500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 20819433-20821432 Phaseolus vulgaris
Phvul.005G072500 5.0kb upstream 5.0kb upstream 9217 true Chr05: 20810216-20819432 Phaseolus vulgaris
Phvul.005G072500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 20810216-20815215 Phaseolus vulgaris
Phvul.005G072500 5.0kb downstream 5.0kb downstream 9217 true Chr05: 20815216-20824432 Phaseolus vulgaris
Phvul.005G072500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 20819433-20824432 Phaseolus vulgaris
Phvul.005G072500 10.0kb upstream 10.0kb upstream 14217 true Chr05: 20805216-20819432 Phaseolus vulgaris
Phvul.005G072500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 20805216-20815215 Phaseolus vulgaris
Phvul.005G072500 10.0kb downstream 10.0kb downstream 14217 true Chr05: 20815216-20829432 Phaseolus vulgaris
Phvul.005G072500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 20819433-20829432 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304344 5265 Fabidae View MSA
124070239 5270 Rosid View MSA
123743643 5271 Pentapetalae View MSA
122791245 5272 Eudicot View MSA
122042021 5273 Angiosperm View MSA
121350876 5274 Embryophyte View MSA
123428188 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.9032 0.0 79.0727   Low
cufflinks 37.8615 0.0 102.016 High  
cufflinks 44.4348 0.0 121.636 High  
cufflinks 29.3856 0.0 77.1781   Low
cufflinks 42.1743 0.0 113.854 High  
cufflinks 43.0557 0.0 117.489 High  
cufflinks 47.8634 0.0 132.401 High  
cufflinks 45.717 0.0 126.124 High  
cufflinks 66.1151 0.0 189.399 High High
cufflinks 59.0291 0.0 165.93 High High
cufflinks 52.1142 0.0 144.283 High  

0 Strain