Gene : Phvul.007G213700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10381:SF12 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 5, CHLOROPLASTIC Genomic Order:  1993
Name:  ? Phvul.007G213700 Secondary Identifier:  ? PAC:37166878
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G213700 0.5kb upstream 0.5kb upstream 4372 true Chr07: 33614378-33618749 Phaseolus vulgaris
Phvul.007G213700 0.5kb upstream 0.5kb upstream 500 false Chr07: 33614378-33614877 Phaseolus vulgaris
Phvul.007G213700 0.5kb downstream 0.5kb downstream 4372 true Chr07: 33614878-33619249 Phaseolus vulgaris
Phvul.007G213700 0.5kb downstream 0.5kb downstream 500 false Chr07: 33618750-33619249 Phaseolus vulgaris
Phvul.007G213700 1.0kb upstream 1.0kb upstream 4872 true Chr07: 33613878-33618749 Phaseolus vulgaris
Phvul.007G213700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 33613878-33614877 Phaseolus vulgaris
Phvul.007G213700 1.0kb downstream 1.0kb downstream 4872 true Chr07: 33614878-33619749 Phaseolus vulgaris
Phvul.007G213700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 33618750-33619749 Phaseolus vulgaris
Phvul.007G213700 2.0kb upstream 2.0kb upstream 5872 true Chr07: 33612878-33618749 Phaseolus vulgaris
Phvul.007G213700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 33612878-33614877 Phaseolus vulgaris
Phvul.007G213700 2.0kb downstream 2.0kb downstream 5872 true Chr07: 33614878-33620749 Phaseolus vulgaris
Phvul.007G213700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 33618750-33620749 Phaseolus vulgaris
Phvul.007G213700 5.0kb upstream 5.0kb upstream 8872 true Chr07: 33609878-33618749 Phaseolus vulgaris
Phvul.007G213700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 33609878-33614877 Phaseolus vulgaris
Phvul.007G213700 5.0kb downstream 5.0kb downstream 8872 true Chr07: 33614878-33623749 Phaseolus vulgaris
Phvul.007G213700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 33618750-33623749 Phaseolus vulgaris
Phvul.007G213700 10.0kb upstream 10.0kb upstream 13872 true Chr07: 33604878-33618749 Phaseolus vulgaris
Phvul.007G213700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 33604878-33614877 Phaseolus vulgaris
Phvul.007G213700 10.0kb downstream 10.0kb downstream 13872 true Chr07: 33614878-33628749 Phaseolus vulgaris
Phvul.007G213700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 33618750-33628749 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308927 5265 Fabidae View MSA
124067501 5270 Rosid View MSA
123746339 5271 Pentapetalae View MSA
122771871 5272 Eudicot View MSA
122043333 5273 Angiosperm View MSA
121344238 5274 Embryophyte View MSA
123424888 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 218.23 0.0 654.558 High High
cufflinks 70.994 0.0 188.279 High  
cufflinks 102.63 0.0 281.284 High  
cufflinks 78.68 0.0 209.316 High  
cufflinks 38.0696 0.0 98.4148 High  
cufflinks 84.8701 0.0 228.544 High  
cufflinks 19.7975 0.0 51.8616   Low
cufflinks 29.2114 0.0 75.5559 High  
cufflinks 21.3557 0.0 55.8015   Low
cufflinks 74.8047 0.0 198.805 High  
cufflinks 40.0956 0.0 103.698 High  

0 Strain