Gene : Phvul.007G211400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  1971
Name:  ? Phvul.007G211400 Secondary Identifier:  ? PAC:37166776
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G211400 0.5kb upstream 0.5kb upstream 2828 true Chr07: 33330968-33333795 Phaseolus vulgaris
Phvul.007G211400 0.5kb upstream 0.5kb upstream 500 false Chr07: 33330968-33331467 Phaseolus vulgaris
Phvul.007G211400 0.5kb downstream 0.5kb downstream 2828 true Chr07: 33331468-33334295 Phaseolus vulgaris
Phvul.007G211400 0.5kb downstream 0.5kb downstream 500 false Chr07: 33333796-33334295 Phaseolus vulgaris
Phvul.007G211400 1.0kb upstream 1.0kb upstream 3328 true Chr07: 33330468-33333795 Phaseolus vulgaris
Phvul.007G211400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 33330468-33331467 Phaseolus vulgaris
Phvul.007G211400 1.0kb downstream 1.0kb downstream 3328 true Chr07: 33331468-33334795 Phaseolus vulgaris
Phvul.007G211400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 33333796-33334795 Phaseolus vulgaris
Phvul.007G211400 2.0kb upstream 2.0kb upstream 4328 true Chr07: 33329468-33333795 Phaseolus vulgaris
Phvul.007G211400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 33329468-33331467 Phaseolus vulgaris
Phvul.007G211400 2.0kb downstream 2.0kb downstream 4328 true Chr07: 33331468-33335795 Phaseolus vulgaris
Phvul.007G211400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 33333796-33335795 Phaseolus vulgaris
Phvul.007G211400 5.0kb upstream 5.0kb upstream 7328 true Chr07: 33326468-33333795 Phaseolus vulgaris
Phvul.007G211400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 33326468-33331467 Phaseolus vulgaris
Phvul.007G211400 5.0kb downstream 5.0kb downstream 7328 true Chr07: 33331468-33338795 Phaseolus vulgaris
Phvul.007G211400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 33333796-33338795 Phaseolus vulgaris
Phvul.007G211400 10.0kb upstream 10.0kb upstream 12328 true Chr07: 33321468-33333795 Phaseolus vulgaris
Phvul.007G211400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 33321468-33331467 Phaseolus vulgaris
Phvul.007G211400 10.0kb downstream 10.0kb downstream 12328 true Chr07: 33331468-33343795 Phaseolus vulgaris
Phvul.007G211400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 33333796-33343795 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312422 5265 Fabidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.361141 0.0 1.37953 Low  
cufflinks 0.221988 0.0 0.882049 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.50216 0.0 7.90106    
cufflinks 0.0746854 0.0 0.327112 Low Low
cufflinks 0.19127 0.0 0.767841 Low  
cufflinks 3.4159 0.0 10.3415   High
cufflinks 4.28666 0.0 12.5874   High
cufflinks 2.86907 0.0 8.88663   High
cufflinks 0.0679687 0.0 0.299384 Low Low
cufflinks 0.0674107 0.0 0.298245 Low Low

0 Strain