Gene : Phvul.005G075100 P. vulgaris v2.1
Defline:  (1 of 46) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  730
Name:  ? Phvul.005G075100 Secondary Identifier:  ? PAC:37153229
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G075100 0.5kb upstream 0.5kb upstream 3833 true Chr05: 13742677-13746509 Phaseolus vulgaris
Phvul.005G075100 0.5kb upstream 0.5kb upstream 500 false Chr05: 13742677-13743176 Phaseolus vulgaris
Phvul.005G075100 0.5kb downstream 0.5kb downstream 3833 true Chr05: 13743177-13747009 Phaseolus vulgaris
Phvul.005G075100 0.5kb downstream 0.5kb downstream 500 false Chr05: 13746510-13747009 Phaseolus vulgaris
Phvul.005G075100 1.0kb upstream 1.0kb upstream 4333 true Chr05: 13742177-13746509 Phaseolus vulgaris
Phvul.005G075100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 13742177-13743176 Phaseolus vulgaris
Phvul.005G075100 1.0kb downstream 1.0kb downstream 4333 true Chr05: 13743177-13747509 Phaseolus vulgaris
Phvul.005G075100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 13746510-13747509 Phaseolus vulgaris
Phvul.005G075100 2.0kb upstream 2.0kb upstream 5333 true Chr05: 13741177-13746509 Phaseolus vulgaris
Phvul.005G075100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 13741177-13743176 Phaseolus vulgaris
Phvul.005G075100 2.0kb downstream 2.0kb downstream 5333 true Chr05: 13743177-13748509 Phaseolus vulgaris
Phvul.005G075100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 13746510-13748509 Phaseolus vulgaris
Phvul.005G075100 5.0kb upstream 5.0kb upstream 8333 true Chr05: 13738177-13746509 Phaseolus vulgaris
Phvul.005G075100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 13738177-13743176 Phaseolus vulgaris
Phvul.005G075100 5.0kb downstream 5.0kb downstream 8333 true Chr05: 13743177-13751509 Phaseolus vulgaris
Phvul.005G075100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 13746510-13751509 Phaseolus vulgaris
Phvul.005G075100 10.0kb upstream 10.0kb upstream 13333 true Chr05: 13733177-13746509 Phaseolus vulgaris
Phvul.005G075100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 13733177-13743176 Phaseolus vulgaris
Phvul.005G075100 10.0kb downstream 10.0kb downstream 13333 true Chr05: 13743177-13756509 Phaseolus vulgaris
Phvul.005G075100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 13746510-13756509 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299405 5265 Fabidae View MSA
124050205 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.790018 0.0 2.66669    
cufflinks 2.226 0.0 6.66861   High
cufflinks 1.02099 0.0 3.35407    
cufflinks 1.39088 0.0 4.44162    
cufflinks 0.860647 0.0 2.88987    
cufflinks 2.06006 0.0 6.2216   High
cufflinks 0.968517 0.0 3.16535    
cufflinks 1.39078 0.0 4.38177    
cufflinks 0.5386 0.0 1.88385   Low
cufflinks 1.05531 0.0 3.45655    
cufflinks 1.16515 0.0 3.76088    

0 Strain