Gene : Phvul.007G214200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR33921:SF2 - CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED Genomic Order:  1998
Name:  ? Phvul.007G214200 Secondary Identifier:  ? PAC:37164211
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G214200 0.5kb upstream 0.5kb upstream 1207 true Chr07: 33683047-33684253 Phaseolus vulgaris
Phvul.007G214200 0.5kb upstream 0.5kb upstream 500 false Chr07: 33683047-33683546 Phaseolus vulgaris
Phvul.007G214200 0.5kb downstream 0.5kb downstream 1207 true Chr07: 33683547-33684753 Phaseolus vulgaris
Phvul.007G214200 0.5kb downstream 0.5kb downstream 500 false Chr07: 33684254-33684753 Phaseolus vulgaris
Phvul.007G214200 1.0kb upstream 1.0kb upstream 1707 true Chr07: 33682547-33684253 Phaseolus vulgaris
Phvul.007G214200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 33682547-33683546 Phaseolus vulgaris
Phvul.007G214200 1.0kb downstream 1.0kb downstream 1707 true Chr07: 33683547-33685253 Phaseolus vulgaris
Phvul.007G214200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 33684254-33685253 Phaseolus vulgaris
Phvul.007G214200 2.0kb upstream 2.0kb upstream 2707 true Chr07: 33681547-33684253 Phaseolus vulgaris
Phvul.007G214200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 33681547-33683546 Phaseolus vulgaris
Phvul.007G214200 2.0kb downstream 2.0kb downstream 2707 true Chr07: 33683547-33686253 Phaseolus vulgaris
Phvul.007G214200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 33684254-33686253 Phaseolus vulgaris
Phvul.007G214200 5.0kb upstream 5.0kb upstream 5707 true Chr07: 33678547-33684253 Phaseolus vulgaris
Phvul.007G214200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 33678547-33683546 Phaseolus vulgaris
Phvul.007G214200 5.0kb downstream 5.0kb downstream 5707 true Chr07: 33683547-33689253 Phaseolus vulgaris
Phvul.007G214200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 33684254-33689253 Phaseolus vulgaris
Phvul.007G214200 10.0kb upstream 10.0kb upstream 10707 true Chr07: 33673547-33684253 Phaseolus vulgaris
Phvul.007G214200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 33673547-33683546 Phaseolus vulgaris
Phvul.007G214200 10.0kb downstream 10.0kb downstream 10707 true Chr07: 33683547-33694253 Phaseolus vulgaris
Phvul.007G214200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 33684254-33694253 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298035 5265 Fabidae View MSA
124070241 5270 Rosid View MSA
123742696 5271 Pentapetalae View MSA
122795504 5272 Eudicot View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1211.15 0.0 4651.93 High High
cufflinks 123.151 0.0 327.284 High  
cufflinks 1234.31 0.0 4743.61 High High
cufflinks 195.565 0.0 542.634 High  
cufflinks 30.7888 0.0 80.8386    
cufflinks 266.053 0.0 764.391 High  
cufflinks 3.90185 0.0 12.4309   Low
cufflinks 2.42534 0.0 8.21373   Low
cufflinks 4.59887 0.0 14.3976   Low
cufflinks 227.904 0.0 643.287 High  
cufflinks 30.5593 0.0 80.0902    

0 Strain