Gene : Phvul.005G075600 P. vulgaris v2.1
Defline:  (1 of 1) KOG0845 - Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116) Genomic Order:  757
Name:  ? Phvul.005G075600 Secondary Identifier:  ? PAC:37154311
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G075600 0.5kb upstream 0.5kb upstream 9054 true Chr05: 16798880-16807933 Phaseolus vulgaris
Phvul.005G075600 0.5kb upstream 0.5kb upstream 500 false Chr05: 16798880-16799379 Phaseolus vulgaris
Phvul.005G075600 0.5kb downstream 0.5kb downstream 9054 true Chr05: 16799380-16808433 Phaseolus vulgaris
Phvul.005G075600 0.5kb downstream 0.5kb downstream 500 false Chr05: 16807934-16808433 Phaseolus vulgaris
Phvul.005G075600 1.0kb upstream 1.0kb upstream 9554 true Chr05: 16798380-16807933 Phaseolus vulgaris
Phvul.005G075600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 16798380-16799379 Phaseolus vulgaris
Phvul.005G075600 1.0kb downstream 1.0kb downstream 9554 true Chr05: 16799380-16808933 Phaseolus vulgaris
Phvul.005G075600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 16807934-16808933 Phaseolus vulgaris
Phvul.005G075600 2.0kb upstream 2.0kb upstream 10554 true Chr05: 16797380-16807933 Phaseolus vulgaris
Phvul.005G075600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 16797380-16799379 Phaseolus vulgaris
Phvul.005G075600 2.0kb downstream 2.0kb downstream 10554 true Chr05: 16799380-16809933 Phaseolus vulgaris
Phvul.005G075600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 16807934-16809933 Phaseolus vulgaris
Phvul.005G075600 5.0kb upstream 5.0kb upstream 13554 true Chr05: 16794380-16807933 Phaseolus vulgaris
Phvul.005G075600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 16794380-16799379 Phaseolus vulgaris
Phvul.005G075600 5.0kb downstream 5.0kb downstream 13554 true Chr05: 16799380-16812933 Phaseolus vulgaris
Phvul.005G075600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 16807934-16812933 Phaseolus vulgaris
Phvul.005G075600 10.0kb upstream 10.0kb upstream 18554 true Chr05: 16789380-16807933 Phaseolus vulgaris
Phvul.005G075600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 16789380-16799379 Phaseolus vulgaris
Phvul.005G075600 10.0kb downstream 10.0kb downstream 18554 true Chr05: 16799380-16817933 Phaseolus vulgaris
Phvul.005G075600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 16807934-16817933 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307700 5265 Fabidae View MSA
124061864 5270 Rosid View MSA
123748776 5271 Pentapetalae View MSA
122797875 5272 Eudicot View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.0019 0.0 38.8733   Low
cufflinks 31.9507 0.0 86.3934    
cufflinks 25.2361 0.0 67.0007    
cufflinks 14.5586 0.0 37.6822   Low
cufflinks 30.3566 0.0 81.5848    
cufflinks 30.735 0.0 82.8425    
cufflinks 33.7759 0.0 91.8698 High  
cufflinks 30.1604 0.0 81.2465 High  
cufflinks 36.5709 0.0 100.092 High  
cufflinks 44.3385 0.0 123.825 High High
cufflinks 31.9101 0.0 86.1236    

0 Strain