Gene : Phvul.005G061400 P. vulgaris v2.1
Defline:  (1 of 9) K11855 - ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] (USP36_42) Genomic Order:  608
Name:  ? Phvul.005G061400 Secondary Identifier:  ? PAC:37153828
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G061400 0.5kb upstream 0.5kb upstream 9064 true Chr05: 8989769-8998832 Phaseolus vulgaris
Phvul.005G061400 0.5kb upstream 0.5kb upstream 500 false Chr05: 8998333-8998832 Phaseolus vulgaris
Phvul.005G061400 0.5kb downstream 0.5kb downstream 9064 true Chr05: 8989269-8998332 Phaseolus vulgaris
Phvul.005G061400 0.5kb downstream 0.5kb downstream 500 false Chr05: 8989269-8989768 Phaseolus vulgaris
Phvul.005G061400 1.0kb upstream 1.0kb upstream 9564 true Chr05: 8989769-8999332 Phaseolus vulgaris
Phvul.005G061400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 8998333-8999332 Phaseolus vulgaris
Phvul.005G061400 1.0kb downstream 1.0kb downstream 9564 true Chr05: 8988769-8998332 Phaseolus vulgaris
Phvul.005G061400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 8988769-8989768 Phaseolus vulgaris
Phvul.005G061400 2.0kb upstream 2.0kb upstream 10564 true Chr05: 8989769-9000332 Phaseolus vulgaris
Phvul.005G061400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 8998333-9000332 Phaseolus vulgaris
Phvul.005G061400 2.0kb downstream 2.0kb downstream 10564 true Chr05: 8987769-8998332 Phaseolus vulgaris
Phvul.005G061400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 8987769-8989768 Phaseolus vulgaris
Phvul.005G061400 5.0kb upstream 5.0kb upstream 13564 true Chr05: 8989769-9003332 Phaseolus vulgaris
Phvul.005G061400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 8998333-9003332 Phaseolus vulgaris
Phvul.005G061400 5.0kb downstream 5.0kb downstream 13564 true Chr05: 8984769-8998332 Phaseolus vulgaris
Phvul.005G061400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 8984769-8989768 Phaseolus vulgaris
Phvul.005G061400 10.0kb upstream 10.0kb upstream 18564 true Chr05: 8989769-9008332 Phaseolus vulgaris
Phvul.005G061400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 8998333-9008332 Phaseolus vulgaris
Phvul.005G061400 10.0kb downstream 10.0kb downstream 18564 true Chr05: 8979769-8998332 Phaseolus vulgaris
Phvul.005G061400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 8979769-8989768 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299615 5265 Fabidae View MSA
124069029 5270 Rosid View MSA
123741406 5271 Pentapetalae View MSA
122770044 5272 Eudicot View MSA
122046939 5273 Angiosperm View MSA
121350818 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.80333 0.0 10.9002   Low
cufflinks 12.9205 0.0 46.1017    
cufflinks 12.7706 0.0 45.2695    
cufflinks 2.58614 0.0 9.05202   Low
cufflinks 7.19163 0.0 23.69    
cufflinks 12.4209 0.0 39.6789    
cufflinks 8.67914 0.0 28.0955    
cufflinks 6.61953 0.0 21.8233    
cufflinks 10.8617 0.0 34.6316    
cufflinks 9.82319 0.0 34.9461    
cufflinks 6.13554 0.0 20.916    

0 Strain