Gene : Phvul.007G200500 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1863
Name:  ? Phvul.007G200500 Secondary Identifier:  ? PAC:37165307
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G200500 0.5kb upstream 0.5kb upstream 2372 true Chr07: 32349928-32352299 Phaseolus vulgaris
Phvul.007G200500 0.5kb upstream 0.5kb upstream 500 false Chr07: 32349928-32350427 Phaseolus vulgaris
Phvul.007G200500 0.5kb downstream 0.5kb downstream 2372 true Chr07: 32350428-32352799 Phaseolus vulgaris
Phvul.007G200500 0.5kb downstream 0.5kb downstream 500 false Chr07: 32352300-32352799 Phaseolus vulgaris
Phvul.007G200500 1.0kb upstream 1.0kb upstream 2872 true Chr07: 32349428-32352299 Phaseolus vulgaris
Phvul.007G200500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 32349428-32350427 Phaseolus vulgaris
Phvul.007G200500 1.0kb downstream 1.0kb downstream 2872 true Chr07: 32350428-32353299 Phaseolus vulgaris
Phvul.007G200500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 32352300-32353299 Phaseolus vulgaris
Phvul.007G200500 2.0kb upstream 2.0kb upstream 3872 true Chr07: 32348428-32352299 Phaseolus vulgaris
Phvul.007G200500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 32348428-32350427 Phaseolus vulgaris
Phvul.007G200500 2.0kb downstream 2.0kb downstream 3872 true Chr07: 32350428-32354299 Phaseolus vulgaris
Phvul.007G200500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 32352300-32354299 Phaseolus vulgaris
Phvul.007G200500 5.0kb upstream 5.0kb upstream 6872 true Chr07: 32345428-32352299 Phaseolus vulgaris
Phvul.007G200500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 32345428-32350427 Phaseolus vulgaris
Phvul.007G200500 5.0kb downstream 5.0kb downstream 6872 true Chr07: 32350428-32357299 Phaseolus vulgaris
Phvul.007G200500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 32352300-32357299 Phaseolus vulgaris
Phvul.007G200500 10.0kb upstream 10.0kb upstream 11872 true Chr07: 32340428-32352299 Phaseolus vulgaris
Phvul.007G200500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 32340428-32350427 Phaseolus vulgaris
Phvul.007G200500 10.0kb downstream 10.0kb downstream 11872 true Chr07: 32350428-32362299 Phaseolus vulgaris
Phvul.007G200500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 32352300-32362299 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304577 5265 Fabidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.65582 0.0 7.90701    
cufflinks 3.23122 0.0 9.44603    
cufflinks 1.67639 0.0 5.30592   Low
cufflinks 3.37699 0.0 9.82273   High
cufflinks 3.22235 0.0 9.40949    
cufflinks 1.71793 0.0 5.39966   Low
cufflinks 2.17503 0.0 6.61146    
cufflinks 2.8515 0.0 8.44208    
cufflinks 2.67917 0.0 7.98462    
cufflinks 3.22907 0.0 9.44026    
cufflinks 2.82613 0.0 8.3636    

0 Strain