Gene : Phvul.007G198900 P. vulgaris v2.1
Defline:  (1 of 3) PTHR22847:SF424 - TOPLESS-RELATED PROTEIN 2-RELATED Genomic Order:  1847
Name:  ? Phvul.007G198900 Secondary Identifier:  ? PAC:37166774
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G198900 0.5kb upstream 0.5kb upstream 9064 true Chr07: 32230368-32239431 Phaseolus vulgaris
Phvul.007G198900 0.5kb upstream 0.5kb upstream 500 false Chr07: 32230368-32230867 Phaseolus vulgaris
Phvul.007G198900 0.5kb downstream 0.5kb downstream 9064 true Chr07: 32230868-32239931 Phaseolus vulgaris
Phvul.007G198900 0.5kb downstream 0.5kb downstream 500 false Chr07: 32239432-32239931 Phaseolus vulgaris
Phvul.007G198900 1.0kb upstream 1.0kb upstream 9564 true Chr07: 32229868-32239431 Phaseolus vulgaris
Phvul.007G198900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 32229868-32230867 Phaseolus vulgaris
Phvul.007G198900 1.0kb downstream 1.0kb downstream 9564 true Chr07: 32230868-32240431 Phaseolus vulgaris
Phvul.007G198900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 32239432-32240431 Phaseolus vulgaris
Phvul.007G198900 2.0kb upstream 2.0kb upstream 10564 true Chr07: 32228868-32239431 Phaseolus vulgaris
Phvul.007G198900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 32228868-32230867 Phaseolus vulgaris
Phvul.007G198900 2.0kb downstream 2.0kb downstream 10564 true Chr07: 32230868-32241431 Phaseolus vulgaris
Phvul.007G198900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 32239432-32241431 Phaseolus vulgaris
Phvul.007G198900 5.0kb upstream 5.0kb upstream 13564 true Chr07: 32225868-32239431 Phaseolus vulgaris
Phvul.007G198900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 32225868-32230867 Phaseolus vulgaris
Phvul.007G198900 5.0kb downstream 5.0kb downstream 13564 true Chr07: 32230868-32244431 Phaseolus vulgaris
Phvul.007G198900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 32239432-32244431 Phaseolus vulgaris
Phvul.007G198900 10.0kb upstream 10.0kb upstream 18564 true Chr07: 32220868-32239431 Phaseolus vulgaris
Phvul.007G198900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 32220868-32230867 Phaseolus vulgaris
Phvul.007G198900 10.0kb downstream 10.0kb downstream 18564 true Chr07: 32230868-32249431 Phaseolus vulgaris
Phvul.007G198900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 32239432-32249431 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026551 5273 Angiosperm View MSA
122313709 5265 Fabidae View MSA
124065590 5270 Rosid View MSA
123741306 5271 Pentapetalae View MSA
122793057 5272 Eudicot View MSA
121296383 5274 Embryophyte View MSA
123334555 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.7461 0.0 51.7738    
cufflinks 33.5256 0.0 91.3843 High  
cufflinks 24.4595 0.0 65.12    
cufflinks 14.1962 0.0 36.7315   Low
cufflinks 24.0498 0.0 63.6256    
cufflinks 31.3023 0.0 84.8629    
cufflinks 43.093 0.0 120.5 High  
cufflinks 37.285 0.0 103.106 High  
cufflinks 33.8708 0.0 92.255 High  
cufflinks 69.5926 0.0 206.69 High High
cufflinks 22.5572 0.0 59.4037    

0 Strain