Gene : Phvul.007G201400 P. vulgaris v2.1

Defline:  (1 of 2) PTHR11850//PTHR11850:SF102 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Genomic Order:  1872
Name:  ? Phvul.007G201400 Secondary Identifier:  ? PAC:37166363

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G201400 0.5kb upstream 0.5kb upstream 4730 true Chr07: 32412463-32417192 Phaseolus vulgaris
Phvul.007G201400 0.5kb upstream 0.5kb upstream 500 false Chr07: 32416693-32417192 Phaseolus vulgaris
Phvul.007G201400 0.5kb downstream 0.5kb downstream 4730 true Chr07: 32411963-32416692 Phaseolus vulgaris
Phvul.007G201400 0.5kb downstream 0.5kb downstream 500 false Chr07: 32411963-32412462 Phaseolus vulgaris
Phvul.007G201400 1.0kb upstream 1.0kb upstream 5230 true Chr07: 32412463-32417692 Phaseolus vulgaris
Phvul.007G201400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 32416693-32417692 Phaseolus vulgaris
Phvul.007G201400 1.0kb downstream 1.0kb downstream 5230 true Chr07: 32411463-32416692 Phaseolus vulgaris
Phvul.007G201400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 32411463-32412462 Phaseolus vulgaris
Phvul.007G201400 2.0kb upstream 2.0kb upstream 6230 true Chr07: 32412463-32418692 Phaseolus vulgaris
Phvul.007G201400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 32416693-32418692 Phaseolus vulgaris
Phvul.007G201400 2.0kb downstream 2.0kb downstream 6230 true Chr07: 32410463-32416692 Phaseolus vulgaris
Phvul.007G201400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 32410463-32412462 Phaseolus vulgaris
Phvul.007G201400 5.0kb upstream 5.0kb upstream 9230 true Chr07: 32412463-32421692 Phaseolus vulgaris
Phvul.007G201400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 32416693-32421692 Phaseolus vulgaris
Phvul.007G201400 5.0kb downstream 5.0kb downstream 9230 true Chr07: 32407463-32416692 Phaseolus vulgaris
Phvul.007G201400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 32407463-32412462 Phaseolus vulgaris
Phvul.007G201400 10.0kb upstream 10.0kb upstream 14230 true Chr07: 32412463-32426692 Phaseolus vulgaris
Phvul.007G201400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 32416693-32426692 Phaseolus vulgaris
Phvul.007G201400 10.0kb downstream 10.0kb downstream 14230 true Chr07: 32402463-32416692 Phaseolus vulgaris
Phvul.007G201400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 32402463-32412462 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302839 5265 Fabidae View MSA
124071044 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.88365 0.0 8.85433    
cufflinks 2.98933 0.0 9.16809    
cufflinks 0.379449 0.0 1.43606 Low Low
cufflinks 4.32061 0.0 12.7449    
cufflinks 23.1718 0.0 60.0268   High
cufflinks 0.413368 0.0 1.55497 Low Low
cufflinks 2.82824 0.0 8.69386    
cufflinks 1.82577 0.0 5.8852    
cufflinks 1.35906 0.0 4.55343    
cufflinks 5.3034 0.0 15.2657    
cufflinks 18.6357 0.0 48.5832   High

0 Strain