Gene : Phvul.005G066200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Genomic Order:  660
Name:  ? Phvul.005G066200 Secondary Identifier:  ? PAC:37153317
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G066200 0.5kb upstream 0.5kb upstream 2681 true Chr05: 11037666-11040346 Phaseolus vulgaris
Phvul.005G066200 0.5kb upstream 0.5kb upstream 500 false Chr05: 11037666-11038165 Phaseolus vulgaris
Phvul.005G066200 0.5kb downstream 0.5kb downstream 2681 true Chr05: 11038166-11040846 Phaseolus vulgaris
Phvul.005G066200 0.5kb downstream 0.5kb downstream 500 false Chr05: 11040347-11040846 Phaseolus vulgaris
Phvul.005G066200 1.0kb upstream 1.0kb upstream 3181 true Chr05: 11037166-11040346 Phaseolus vulgaris
Phvul.005G066200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 11037166-11038165 Phaseolus vulgaris
Phvul.005G066200 1.0kb downstream 1.0kb downstream 3181 true Chr05: 11038166-11041346 Phaseolus vulgaris
Phvul.005G066200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 11040347-11041346 Phaseolus vulgaris
Phvul.005G066200 2.0kb upstream 2.0kb upstream 4181 true Chr05: 11036166-11040346 Phaseolus vulgaris
Phvul.005G066200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 11036166-11038165 Phaseolus vulgaris
Phvul.005G066200 2.0kb downstream 2.0kb downstream 4181 true Chr05: 11038166-11042346 Phaseolus vulgaris
Phvul.005G066200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 11040347-11042346 Phaseolus vulgaris
Phvul.005G066200 5.0kb upstream 5.0kb upstream 7181 true Chr05: 11033166-11040346 Phaseolus vulgaris
Phvul.005G066200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 11033166-11038165 Phaseolus vulgaris
Phvul.005G066200 5.0kb downstream 5.0kb downstream 7181 true Chr05: 11038166-11045346 Phaseolus vulgaris
Phvul.005G066200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 11040347-11045346 Phaseolus vulgaris
Phvul.005G066200 10.0kb upstream 10.0kb upstream 12181 true Chr05: 11028166-11040346 Phaseolus vulgaris
Phvul.005G066200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 11028166-11038165 Phaseolus vulgaris
Phvul.005G066200 10.0kb downstream 10.0kb downstream 12181 true Chr05: 11038166-11050346 Phaseolus vulgaris
Phvul.005G066200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 11040347-11050346 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
122313647 5265 Fabidae View MSA
124074351 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.3656 0.0 10.9921    
cufflinks 40.6247 0.0 105.415 High High
cufflinks 0.131747 0.0 0.574215 Low Low
cufflinks 1.97616 0.0 6.88148    
cufflinks 2.80117 0.0 9.3792    
cufflinks 0.100832 0.0 0.452531 Low Low
cufflinks 20.2949 0.0 54.7304    
cufflinks 11.8634 0.0 33.4852    
cufflinks 10.0923 0.0 29.0547    
cufflinks 61.0063 0.0 157.739 High High
cufflinks 7.40715 0.0 22.1446    

0 Strain