Gene : Phvul.005G051400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR34777:SF1 - VQ MOTIF-CONTAINING PROTEIN Genomic Order:  508
Name:  ? Phvul.005G051400 Secondary Identifier:  ? PAC:37152870
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G051400 0.5kb upstream 0.5kb upstream 1038 true Chr05: 6345152-6346189 Phaseolus vulgaris
Phvul.005G051400 0.5kb upstream 0.5kb upstream 500 false Chr05: 6345690-6346189 Phaseolus vulgaris
Phvul.005G051400 0.5kb downstream 0.5kb downstream 1038 true Chr05: 6344652-6345689 Phaseolus vulgaris
Phvul.005G051400 0.5kb downstream 0.5kb downstream 500 false Chr05: 6344652-6345151 Phaseolus vulgaris
Phvul.005G051400 1.0kb upstream 1.0kb upstream 1538 true Chr05: 6345152-6346689 Phaseolus vulgaris
Phvul.005G051400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 6345690-6346689 Phaseolus vulgaris
Phvul.005G051400 1.0kb downstream 1.0kb downstream 1538 true Chr05: 6344152-6345689 Phaseolus vulgaris
Phvul.005G051400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 6344152-6345151 Phaseolus vulgaris
Phvul.005G051400 2.0kb upstream 2.0kb upstream 2538 true Chr05: 6345152-6347689 Phaseolus vulgaris
Phvul.005G051400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 6345690-6347689 Phaseolus vulgaris
Phvul.005G051400 2.0kb downstream 2.0kb downstream 2538 true Chr05: 6343152-6345689 Phaseolus vulgaris
Phvul.005G051400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 6343152-6345151 Phaseolus vulgaris
Phvul.005G051400 5.0kb upstream 5.0kb upstream 5538 true Chr05: 6345152-6350689 Phaseolus vulgaris
Phvul.005G051400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 6345690-6350689 Phaseolus vulgaris
Phvul.005G051400 5.0kb downstream 5.0kb downstream 5538 true Chr05: 6340152-6345689 Phaseolus vulgaris
Phvul.005G051400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 6340152-6345151 Phaseolus vulgaris
Phvul.005G051400 10.0kb upstream 10.0kb upstream 10538 true Chr05: 6345152-6355689 Phaseolus vulgaris
Phvul.005G051400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 6345690-6355689 Phaseolus vulgaris
Phvul.005G051400 10.0kb downstream 10.0kb downstream 10538 true Chr05: 6335152-6345689 Phaseolus vulgaris
Phvul.005G051400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 6335152-6345151 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026461 5273 Angiosperm View MSA
122297597 5265 Fabidae View MSA
124050155 5270 Rosid View MSA
123744131 5271 Pentapetalae View MSA
122770912 5272 Eudicot View MSA
121296343 5274 Embryophyte View MSA
123334522 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.34197 0.0 8.5826    
cufflinks 0.567755 0.0 2.33857   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.620137 0.0 2.5307   Low
cufflinks 0.592568 0.0 2.43874 Low Low
cufflinks 2.23158 0.0 8.23897    
cufflinks 2.69385 0.0 9.74692   High
cufflinks 1.90037 0.0 7.10028    
cufflinks 0.886716 0.0 3.50912    
cufflinks 3.07479 0.0 11.0502   High
cufflinks 0.866618 0.0 3.45282    

0 Strain