Gene : Phvul.007G198800 P. vulgaris v2.1
Defline:  (1 of 3) K09840 - 9-cis-epoxycarotenoid dioxygenase (NCED) Genomic Order:  1846
Name:  ? Phvul.007G198800 Secondary Identifier:  ? PAC:37165222
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-695 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G198800 0.5kb upstream 0.5kb upstream 2516 true Chr07: 32219465-32221980 Phaseolus vulgaris
Phvul.007G198800 0.5kb upstream 0.5kb upstream 500 false Chr07: 32221481-32221980 Phaseolus vulgaris
Phvul.007G198800 0.5kb downstream 0.5kb downstream 2516 true Chr07: 32218965-32221480 Phaseolus vulgaris
Phvul.007G198800 0.5kb downstream 0.5kb downstream 500 false Chr07: 32218965-32219464 Phaseolus vulgaris
Phvul.007G198800 1.0kb upstream 1.0kb upstream 3016 true Chr07: 32219465-32222480 Phaseolus vulgaris
Phvul.007G198800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 32221481-32222480 Phaseolus vulgaris
Phvul.007G198800 1.0kb downstream 1.0kb downstream 3016 true Chr07: 32218465-32221480 Phaseolus vulgaris
Phvul.007G198800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 32218465-32219464 Phaseolus vulgaris
Phvul.007G198800 2.0kb upstream 2.0kb upstream 4016 true Chr07: 32219465-32223480 Phaseolus vulgaris
Phvul.007G198800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 32221481-32223480 Phaseolus vulgaris
Phvul.007G198800 2.0kb downstream 2.0kb downstream 4016 true Chr07: 32217465-32221480 Phaseolus vulgaris
Phvul.007G198800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 32217465-32219464 Phaseolus vulgaris
Phvul.007G198800 5.0kb upstream 5.0kb upstream 7016 true Chr07: 32219465-32226480 Phaseolus vulgaris
Phvul.007G198800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 32221481-32226480 Phaseolus vulgaris
Phvul.007G198800 5.0kb downstream 5.0kb downstream 7016 true Chr07: 32214465-32221480 Phaseolus vulgaris
Phvul.007G198800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 32214465-32219464 Phaseolus vulgaris
Phvul.007G198800 10.0kb upstream 10.0kb upstream 12016 true Chr07: 32219465-32231480 Phaseolus vulgaris
Phvul.007G198800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 32221481-32231480 Phaseolus vulgaris
Phvul.007G198800 10.0kb downstream 10.0kb downstream 12016 true Chr07: 32209465-32221480 Phaseolus vulgaris
Phvul.007G198800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 32209465-32219464 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310479 5265 Fabidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.13566 0.0 0.536134 Low  
cufflinks 4.67045 0.0 12.9823   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.17287 0.0 0.668179 Low  
cufflinks 0.139983 0.0 0.551145 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.072334 0.0 0.300957 Low  
cufflinks 0.0137385 0.0 0.0667302 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.143155 0.0 0.562346 Low  

0 Strain