Gene : Phvul.007G197200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11991 - TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED Genomic Order:  1830
Name:  ? Phvul.007G197200 Secondary Identifier:  ? PAC:37164477
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G197200 0.5kb upstream 0.5kb upstream 2355 true Chr07: 32049798-32052152 Phaseolus vulgaris
Phvul.007G197200 0.5kb upstream 0.5kb upstream 500 false Chr07: 32051653-32052152 Phaseolus vulgaris
Phvul.007G197200 0.5kb downstream 0.5kb downstream 2355 true Chr07: 32049298-32051652 Phaseolus vulgaris
Phvul.007G197200 0.5kb downstream 0.5kb downstream 500 false Chr07: 32049298-32049797 Phaseolus vulgaris
Phvul.007G197200 1.0kb upstream 1.0kb upstream 2855 true Chr07: 32049798-32052652 Phaseolus vulgaris
Phvul.007G197200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 32051653-32052652 Phaseolus vulgaris
Phvul.007G197200 1.0kb downstream 1.0kb downstream 2855 true Chr07: 32048798-32051652 Phaseolus vulgaris
Phvul.007G197200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 32048798-32049797 Phaseolus vulgaris
Phvul.007G197200 2.0kb upstream 2.0kb upstream 3855 true Chr07: 32049798-32053652 Phaseolus vulgaris
Phvul.007G197200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 32051653-32053652 Phaseolus vulgaris
Phvul.007G197200 2.0kb downstream 2.0kb downstream 3855 true Chr07: 32047798-32051652 Phaseolus vulgaris
Phvul.007G197200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 32047798-32049797 Phaseolus vulgaris
Phvul.007G197200 5.0kb upstream 5.0kb upstream 6855 true Chr07: 32049798-32056652 Phaseolus vulgaris
Phvul.007G197200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 32051653-32056652 Phaseolus vulgaris
Phvul.007G197200 5.0kb downstream 5.0kb downstream 6855 true Chr07: 32044798-32051652 Phaseolus vulgaris
Phvul.007G197200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 32044798-32049797 Phaseolus vulgaris
Phvul.007G197200 10.0kb upstream 10.0kb upstream 11855 true Chr07: 32049798-32061652 Phaseolus vulgaris
Phvul.007G197200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 32051653-32061652 Phaseolus vulgaris
Phvul.007G197200 10.0kb downstream 10.0kb downstream 11855 true Chr07: 32039798-32051652 Phaseolus vulgaris
Phvul.007G197200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 32039798-32049797 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303382 5265 Fabidae View MSA
124072412 5270 Rosid View MSA
123743771 5271 Pentapetalae View MSA
122796056 5272 Eudicot View MSA
122046002 5273 Angiosperm View MSA
121343936 5274 Embryophyte View MSA
123424738 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 51.4188 0.0 133.198 High High
cufflinks 12.2602 0.0 35.2849    
cufflinks 18.8175 0.0 51.7703    
cufflinks 21.2702 0.0 58.4653    
cufflinks 9.85505 0.0 29.3289    
cufflinks 6.14361 0.0 19.0638   Low
cufflinks 9.02599 0.0 26.8681    
cufflinks 6.36814 0.0 19.6782   Low
cufflinks 6.81219 0.0 20.9729    
cufflinks 24.2329 0.0 65.7398    
cufflinks 8.46275 0.0 25.5875    

0 Strain