Gene : Phvul.005G057100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21043:SF1 - PROTEIN IOJAP, CHLOROPLASTIC Genomic Order:  565
Name:  ? Phvul.005G057100 Secondary Identifier:  ? PAC:37153171
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G057100 0.5kb upstream 0.5kb upstream 5063 true Chr05: 7616552-7621614 Phaseolus vulgaris
Phvul.005G057100 0.5kb upstream 0.5kb upstream 500 false Chr05: 7621115-7621614 Phaseolus vulgaris
Phvul.005G057100 0.5kb downstream 0.5kb downstream 5063 true Chr05: 7616052-7621114 Phaseolus vulgaris
Phvul.005G057100 0.5kb downstream 0.5kb downstream 500 false Chr05: 7616052-7616551 Phaseolus vulgaris
Phvul.005G057100 1.0kb upstream 1.0kb upstream 5563 true Chr05: 7616552-7622114 Phaseolus vulgaris
Phvul.005G057100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 7621115-7622114 Phaseolus vulgaris
Phvul.005G057100 1.0kb downstream 1.0kb downstream 5563 true Chr05: 7615552-7621114 Phaseolus vulgaris
Phvul.005G057100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 7615552-7616551 Phaseolus vulgaris
Phvul.005G057100 2.0kb upstream 2.0kb upstream 6563 true Chr05: 7616552-7623114 Phaseolus vulgaris
Phvul.005G057100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 7621115-7623114 Phaseolus vulgaris
Phvul.005G057100 2.0kb downstream 2.0kb downstream 6563 true Chr05: 7614552-7621114 Phaseolus vulgaris
Phvul.005G057100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 7614552-7616551 Phaseolus vulgaris
Phvul.005G057100 5.0kb upstream 5.0kb upstream 9563 true Chr05: 7616552-7626114 Phaseolus vulgaris
Phvul.005G057100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 7621115-7626114 Phaseolus vulgaris
Phvul.005G057100 5.0kb downstream 5.0kb downstream 9563 true Chr05: 7611552-7621114 Phaseolus vulgaris
Phvul.005G057100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 7611552-7616551 Phaseolus vulgaris
Phvul.005G057100 10.0kb upstream 10.0kb upstream 14563 true Chr05: 7616552-7631114 Phaseolus vulgaris
Phvul.005G057100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 7621115-7631114 Phaseolus vulgaris
Phvul.005G057100 10.0kb downstream 10.0kb downstream 14563 true Chr05: 7606552-7621114 Phaseolus vulgaris
Phvul.005G057100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 7606552-7616551 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300008 5265 Fabidae View MSA
124067704 5270 Rosid View MSA
123743843 5271 Pentapetalae View MSA
122785584 5272 Eudicot View MSA
122043136 5273 Angiosperm View MSA
121343948 5274 Embryophyte View MSA
123426763 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.8752 0.0 154.763 High High
cufflinks 24.3743 0.0 83.8761    
cufflinks 49.4499 0.0 166.116 High High
cufflinks 23.7281 0.0 81.6477    
cufflinks 10.919 0.0 44.212    
cufflinks 33.6865 0.0 113.685 High  
cufflinks 4.23842 0.0 19.073   Low
cufflinks 5.16377 0.0 21.8538   Low
cufflinks 4.26553 0.0 20.415   Low
cufflinks 18.9735 0.0 68.6058    
cufflinks 9.89392 0.0 32.7463    

0 Strain