Gene : Phvul.007G183800 P. vulgaris v2.1
Defline:  (1 of 3) K13832 - 3-dehydroquinate dehydratase / shikimate dehydrogenase (aroDE, DHQ-SDH) Genomic Order:  1699
Name:  ? Phvul.007G183800 Secondary Identifier:  ? PAC:37165641
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6163 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G183800 0.5kb upstream 0.5kb upstream 6334 true Chr07: 30336195-30342528 Phaseolus vulgaris
Phvul.007G183800 0.5kb upstream 0.5kb upstream 500 false Chr07: 30342029-30342528 Phaseolus vulgaris
Phvul.007G183800 0.5kb downstream 0.5kb downstream 6334 true Chr07: 30335695-30342028 Phaseolus vulgaris
Phvul.007G183800 0.5kb downstream 0.5kb downstream 500 false Chr07: 30335695-30336194 Phaseolus vulgaris
Phvul.007G183800 1.0kb upstream 1.0kb upstream 6834 true Chr07: 30336195-30343028 Phaseolus vulgaris
Phvul.007G183800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 30342029-30343028 Phaseolus vulgaris
Phvul.007G183800 1.0kb downstream 1.0kb downstream 6834 true Chr07: 30335195-30342028 Phaseolus vulgaris
Phvul.007G183800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 30335195-30336194 Phaseolus vulgaris
Phvul.007G183800 2.0kb upstream 2.0kb upstream 7834 true Chr07: 30336195-30344028 Phaseolus vulgaris
Phvul.007G183800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 30342029-30344028 Phaseolus vulgaris
Phvul.007G183800 2.0kb downstream 2.0kb downstream 7834 true Chr07: 30334195-30342028 Phaseolus vulgaris
Phvul.007G183800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 30334195-30336194 Phaseolus vulgaris
Phvul.007G183800 5.0kb upstream 5.0kb upstream 10834 true Chr07: 30336195-30347028 Phaseolus vulgaris
Phvul.007G183800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 30342029-30347028 Phaseolus vulgaris
Phvul.007G183800 5.0kb downstream 5.0kb downstream 10834 true Chr07: 30331195-30342028 Phaseolus vulgaris
Phvul.007G183800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 30331195-30336194 Phaseolus vulgaris
Phvul.007G183800 10.0kb upstream 10.0kb upstream 15834 true Chr07: 30336195-30352028 Phaseolus vulgaris
Phvul.007G183800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 30342029-30352028 Phaseolus vulgaris
Phvul.007G183800 10.0kb downstream 10.0kb downstream 15834 true Chr07: 30326195-30342028 Phaseolus vulgaris
Phvul.007G183800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 30326195-30336194 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302513 5265 Fabidae View MSA
124071132 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.172055 0.0 0.691259 Low  
cufflinks 0.160941 0.0 0.652437 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.162634 0.0 0.667471 Low  
cufflinks 0.256935 0.0 1.01389 Low  
cufflinks 0.75902 0.0 3.30774   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0106679 0.0 0.0763361 Low Low
cufflinks 0.198728 0.0 0.79284 Low  

0 Strain