Gene : Phvul.005G042500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11527//PTHR11527:SF161 - SMALL HEAT-SHOCK PROTEIN HSP20 FAMILY // SUBFAMILY NOT NAMED Genomic Order:  422
Name:  ? Phvul.005G042500 Secondary Identifier:  ? PAC:37152237
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G042500 0.5kb upstream 0.5kb upstream 1128 true Chr05: 4354404-4355531 Phaseolus vulgaris
Phvul.005G042500 0.5kb upstream 0.5kb upstream 500 false Chr05: 4354404-4354903 Phaseolus vulgaris
Phvul.005G042500 0.5kb downstream 0.5kb downstream 1128 true Chr05: 4354904-4356031 Phaseolus vulgaris
Phvul.005G042500 0.5kb downstream 0.5kb downstream 500 false Chr05: 4355532-4356031 Phaseolus vulgaris
Phvul.005G042500 1.0kb upstream 1.0kb upstream 1628 true Chr05: 4353904-4355531 Phaseolus vulgaris
Phvul.005G042500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4353904-4354903 Phaseolus vulgaris
Phvul.005G042500 1.0kb downstream 1.0kb downstream 1628 true Chr05: 4354904-4356531 Phaseolus vulgaris
Phvul.005G042500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4355532-4356531 Phaseolus vulgaris
Phvul.005G042500 2.0kb upstream 2.0kb upstream 2628 true Chr05: 4352904-4355531 Phaseolus vulgaris
Phvul.005G042500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4352904-4354903 Phaseolus vulgaris
Phvul.005G042500 2.0kb downstream 2.0kb downstream 2628 true Chr05: 4354904-4357531 Phaseolus vulgaris
Phvul.005G042500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4355532-4357531 Phaseolus vulgaris
Phvul.005G042500 5.0kb upstream 5.0kb upstream 5628 true Chr05: 4349904-4355531 Phaseolus vulgaris
Phvul.005G042500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4349904-4354903 Phaseolus vulgaris
Phvul.005G042500 5.0kb downstream 5.0kb downstream 5628 true Chr05: 4354904-4360531 Phaseolus vulgaris
Phvul.005G042500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4355532-4360531 Phaseolus vulgaris
Phvul.005G042500 10.0kb upstream 10.0kb upstream 10628 true Chr05: 4344904-4355531 Phaseolus vulgaris
Phvul.005G042500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4344904-4354903 Phaseolus vulgaris
Phvul.005G042500 10.0kb downstream 10.0kb downstream 10628 true Chr05: 4354904-4365531 Phaseolus vulgaris
Phvul.005G042500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4355532-4365531 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305571 5265 Fabidae View MSA
124060649 5270 Rosid View MSA
123750767 5271 Pentapetalae View MSA
122796138 5272 Eudicot View MSA
122051041 5273 Angiosperm View MSA
121312263 5274 Embryophyte View MSA
123349452 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.27637 0.0 14.5149    
cufflinks 1.65912 0.0 6.19748    
cufflinks 1.7364 0.0 6.44177    
cufflinks 5.58779 0.0 18.488    
cufflinks 5.2512 0.0 17.5342    
cufflinks 6.53764 0.0 21.2199    
cufflinks 20.6166 0.0 58.722    
cufflinks 21.4225 0.0 60.8663    
cufflinks 49.066 0.0 130.233 High High
cufflinks 0.159362 0.0 0.730809 Low Low
cufflinks 5.46788 0.0 18.1672    

0 Strain