Gene : Phvul.005G044600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31989:SF48 - PROTEIN SOMBRERO Genomic Order:  443
Name:  ? Phvul.005G044600 Secondary Identifier:  ? PAC:37154308
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G044600 0.5kb upstream 0.5kb upstream 3600 true Chr05: 4666778-4670377 Phaseolus vulgaris
Phvul.005G044600 0.5kb upstream 0.5kb upstream 500 false Chr05: 4669878-4670377 Phaseolus vulgaris
Phvul.005G044600 0.5kb downstream 0.5kb downstream 3600 true Chr05: 4666278-4669877 Phaseolus vulgaris
Phvul.005G044600 0.5kb downstream 0.5kb downstream 500 false Chr05: 4666278-4666777 Phaseolus vulgaris
Phvul.005G044600 1.0kb upstream 1.0kb upstream 4100 true Chr05: 4666778-4670877 Phaseolus vulgaris
Phvul.005G044600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 4669878-4670877 Phaseolus vulgaris
Phvul.005G044600 1.0kb downstream 1.0kb downstream 4100 true Chr05: 4665778-4669877 Phaseolus vulgaris
Phvul.005G044600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 4665778-4666777 Phaseolus vulgaris
Phvul.005G044600 2.0kb upstream 2.0kb upstream 5100 true Chr05: 4666778-4671877 Phaseolus vulgaris
Phvul.005G044600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 4669878-4671877 Phaseolus vulgaris
Phvul.005G044600 2.0kb downstream 2.0kb downstream 5100 true Chr05: 4664778-4669877 Phaseolus vulgaris
Phvul.005G044600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 4664778-4666777 Phaseolus vulgaris
Phvul.005G044600 5.0kb upstream 5.0kb upstream 8100 true Chr05: 4666778-4674877 Phaseolus vulgaris
Phvul.005G044600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 4669878-4674877 Phaseolus vulgaris
Phvul.005G044600 5.0kb downstream 5.0kb downstream 8100 true Chr05: 4661778-4669877 Phaseolus vulgaris
Phvul.005G044600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 4661778-4666777 Phaseolus vulgaris
Phvul.005G044600 10.0kb upstream 10.0kb upstream 13100 true Chr05: 4666778-4679877 Phaseolus vulgaris
Phvul.005G044600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 4669878-4679877 Phaseolus vulgaris
Phvul.005G044600 10.0kb downstream 10.0kb downstream 13100 true Chr05: 4656778-4669877 Phaseolus vulgaris
Phvul.005G044600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 4656778-4666777 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299411 5265 Fabidae View MSA
124063722 5270 Rosid View MSA
123740377 5271 Pentapetalae View MSA
122788631 5272 Eudicot View MSA
122045964 5273 Angiosperm View MSA
121351431 5274 Embryophyte View MSA
123382163 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0511973 0.0 0.242204 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.288677 0.0 1.15287 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.08396 0.0 10.4859    
cufflinks 1.8278 0.0 10.1316    
cufflinks 5.99421 0.0 26.7944   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.113258 0.0 0.488318 Low  

0 Strain