Gene : Phvul.005G048150 P. vulgaris v2.1
Defline:  (1 of 1) K17761 - succinate-semialdehyde dehydrogenase, mitochondrial (SSADH) Genomic Order:  480
Name:  ? Phvul.005G048150 Secondary Identifier:  ? PAC:37153627
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-4321 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6535 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G048150 0.5kb upstream 0.5kb upstream 25530 true Chr05: 5569169-5594698 Phaseolus vulgaris
Phvul.005G048150 0.5kb upstream 0.5kb upstream 500 false Chr05: 5594199-5594698 Phaseolus vulgaris
Phvul.005G048150 0.5kb downstream 0.5kb downstream 25530 true Chr05: 5568669-5594198 Phaseolus vulgaris
Phvul.005G048150 0.5kb downstream 0.5kb downstream 500 false Chr05: 5568669-5569168 Phaseolus vulgaris
Phvul.005G048150 1.0kb upstream 1.0kb upstream 26030 true Chr05: 5569169-5595198 Phaseolus vulgaris
Phvul.005G048150 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5594199-5595198 Phaseolus vulgaris
Phvul.005G048150 1.0kb downstream 1.0kb downstream 26030 true Chr05: 5568169-5594198 Phaseolus vulgaris
Phvul.005G048150 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5568169-5569168 Phaseolus vulgaris
Phvul.005G048150 2.0kb upstream 2.0kb upstream 27030 true Chr05: 5569169-5596198 Phaseolus vulgaris
Phvul.005G048150 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5594199-5596198 Phaseolus vulgaris
Phvul.005G048150 2.0kb downstream 2.0kb downstream 27030 true Chr05: 5567169-5594198 Phaseolus vulgaris
Phvul.005G048150 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5567169-5569168 Phaseolus vulgaris
Phvul.005G048150 5.0kb upstream 5.0kb upstream 30030 true Chr05: 5569169-5599198 Phaseolus vulgaris
Phvul.005G048150 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5594199-5599198 Phaseolus vulgaris
Phvul.005G048150 5.0kb downstream 5.0kb downstream 30030 true Chr05: 5564169-5594198 Phaseolus vulgaris
Phvul.005G048150 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5564169-5569168 Phaseolus vulgaris
Phvul.005G048150 10.0kb upstream 10.0kb upstream 35030 true Chr05: 5569169-5604198 Phaseolus vulgaris
Phvul.005G048150 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5594199-5604198 Phaseolus vulgaris
Phvul.005G048150 10.0kb downstream 10.0kb downstream 35030 true Chr05: 5559169-5594198 Phaseolus vulgaris
Phvul.005G048150 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5559169-5569168 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303483 5265 Fabidae View MSA
124063190 5270 Rosid View MSA
123737868 5271 Pentapetalae View MSA
122769906 5272 Eudicot View MSA
122045886 5273 Angiosperm View MSA
121345720 5274 Embryophyte View MSA
123427690 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.0532 0.0 93.8551    
cufflinks 25.7976 0.0 84.3195    
cufflinks 20.8763 0.0 65.4314    
cufflinks 42.9909 0.0 125.432 High High
cufflinks 15.5121 0.0 43.8144    
cufflinks 18.1279 0.0 58.0941    
cufflinks 10.9318 0.0 36.5552   Low
cufflinks 14.8569 0.0 47.4204    
cufflinks 15.5157 0.0 50.3658    
cufflinks 30.3078 0.0 85.4117    
cufflinks 19.1598 0.0 53.4717    

0 Strain