Gene : Phvul.005G173800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR33427:SF2 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MQD17 Genomic Order:  1632
Name:  ? Phvul.005G173800 Secondary Identifier:  ? PAC:37152269
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G173800 0.5kb upstream 0.5kb upstream 4264 true Chr05: 39963097-39967360 Phaseolus vulgaris
Phvul.005G173800 0.5kb upstream 0.5kb upstream 500 false Chr05: 39963097-39963596 Phaseolus vulgaris
Phvul.005G173800 0.5kb downstream 0.5kb downstream 4264 true Chr05: 39963597-39967860 Phaseolus vulgaris
Phvul.005G173800 0.5kb downstream 0.5kb downstream 500 false Chr05: 39967361-39967860 Phaseolus vulgaris
Phvul.005G173800 1.0kb upstream 1.0kb upstream 4764 true Chr05: 39962597-39967360 Phaseolus vulgaris
Phvul.005G173800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39962597-39963596 Phaseolus vulgaris
Phvul.005G173800 1.0kb downstream 1.0kb downstream 4764 true Chr05: 39963597-39968360 Phaseolus vulgaris
Phvul.005G173800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39967361-39968360 Phaseolus vulgaris
Phvul.005G173800 2.0kb upstream 2.0kb upstream 5764 true Chr05: 39961597-39967360 Phaseolus vulgaris
Phvul.005G173800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39961597-39963596 Phaseolus vulgaris
Phvul.005G173800 2.0kb downstream 2.0kb downstream 5764 true Chr05: 39963597-39969360 Phaseolus vulgaris
Phvul.005G173800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39967361-39969360 Phaseolus vulgaris
Phvul.005G173800 5.0kb upstream 5.0kb upstream 8764 true Chr05: 39958597-39967360 Phaseolus vulgaris
Phvul.005G173800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39958597-39963596 Phaseolus vulgaris
Phvul.005G173800 5.0kb downstream 5.0kb downstream 8764 true Chr05: 39963597-39972360 Phaseolus vulgaris
Phvul.005G173800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39967361-39972360 Phaseolus vulgaris
Phvul.005G173800 10.0kb upstream 10.0kb upstream 13764 true Chr05: 39953597-39967360 Phaseolus vulgaris
Phvul.005G173800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39953597-39963596 Phaseolus vulgaris
Phvul.005G173800 10.0kb downstream 10.0kb downstream 13764 true Chr05: 39963597-39977360 Phaseolus vulgaris
Phvul.005G173800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39967361-39977360 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305246 5265 Fabidae View MSA
124074735 5270 Rosid View MSA
123746273 5271 Pentapetalae View MSA
122791628 5272 Eudicot View MSA
122044746 5273 Angiosperm View MSA
121349480 5274 Embryophyte View MSA
123381326 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.10843 0.0 3.53382    
cufflinks 6.21683 0.0 16.6164    
cufflinks 1.54337 0.0 4.72308    
cufflinks 0.992743 0.0 3.2336    
cufflinks 3.90202 0.0 10.9616    
cufflinks 7.94003 0.0 20.8633    
cufflinks 5.77889 0.0 15.4772    
cufflinks 3.01761 0.0 8.52165    
cufflinks 6.54452 0.0 17.3686    
cufflinks 0.0228763 0.0 0.104907 Low Low
cufflinks 3.28285 0.0 9.3204    

0 Strain