Gene : Phvul.010G030800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22594:SF36 - ASPARAGINE--TRNA LIGASE, CYTOPLASMIC 2 Genomic Order:  307
Name:  ? Phvul.010G030800 Secondary Identifier:  ? PAC:37142612
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G030800 0.5kb upstream 0.5kb upstream 4732 true Chr10: 4465733-4470464 Phaseolus vulgaris
Phvul.010G030800 0.5kb upstream 0.5kb upstream 500 false Chr10: 4465733-4466232 Phaseolus vulgaris
Phvul.010G030800 0.5kb downstream 0.5kb downstream 4732 true Chr10: 4466233-4470964 Phaseolus vulgaris
Phvul.010G030800 0.5kb downstream 0.5kb downstream 500 false Chr10: 4470465-4470964 Phaseolus vulgaris
Phvul.010G030800 1.0kb upstream 1.0kb upstream 5232 true Chr10: 4465233-4470464 Phaseolus vulgaris
Phvul.010G030800 1.0kb upstream 1.0kb upstream 1000 false Chr10: 4465233-4466232 Phaseolus vulgaris
Phvul.010G030800 1.0kb downstream 1.0kb downstream 5232 true Chr10: 4466233-4471464 Phaseolus vulgaris
Phvul.010G030800 1.0kb downstream 1.0kb downstream 1000 false Chr10: 4470465-4471464 Phaseolus vulgaris
Phvul.010G030800 2.0kb upstream 2.0kb upstream 6232 true Chr10: 4464233-4470464 Phaseolus vulgaris
Phvul.010G030800 2.0kb upstream 2.0kb upstream 2000 false Chr10: 4464233-4466232 Phaseolus vulgaris
Phvul.010G030800 2.0kb downstream 2.0kb downstream 6232 true Chr10: 4466233-4472464 Phaseolus vulgaris
Phvul.010G030800 2.0kb downstream 2.0kb downstream 2000 false Chr10: 4470465-4472464 Phaseolus vulgaris
Phvul.010G030800 5.0kb upstream 5.0kb upstream 9232 true Chr10: 4461233-4470464 Phaseolus vulgaris
Phvul.010G030800 5.0kb upstream 5.0kb upstream 5000 false Chr10: 4461233-4466232 Phaseolus vulgaris
Phvul.010G030800 5.0kb downstream 5.0kb downstream 9232 true Chr10: 4466233-4475464 Phaseolus vulgaris
Phvul.010G030800 5.0kb downstream 5.0kb downstream 5000 false Chr10: 4470465-4475464 Phaseolus vulgaris
Phvul.010G030800 10.0kb upstream 10.0kb upstream 14232 true Chr10: 4456233-4470464 Phaseolus vulgaris
Phvul.010G030800 10.0kb upstream 10.0kb upstream 10000 false Chr10: 4456233-4466232 Phaseolus vulgaris
Phvul.010G030800 10.0kb downstream 10.0kb downstream 14232 true Chr10: 4466233-4480464 Phaseolus vulgaris
Phvul.010G030800 10.0kb downstream 10.0kb downstream 10000 false Chr10: 4470465-4480464 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307835 5265 Fabidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.523704 0.0 1.88078    
cufflinks 0.801231 0.0 2.7565    
cufflinks 2.58067 0.0 7.74177    
cufflinks 1.61701 0.0 5.15357    
cufflinks 2.93843 0.0 8.76255    
cufflinks 0.792998 0.0 2.73087    
cufflinks 4.19684 0.0 11.9679    
cufflinks 1.14256 0.0 3.76495    
cufflinks 7.75367 0.0 20.9201   High
cufflinks 0.0391715 0.0 0.175654 Low Low
cufflinks 3.54775 0.0 10.3365    

0 Strain