Gene : Phvul.005G172600 P. vulgaris v2.1
Defline:  (1 of 1) K10803 - DNA-repair protein XRCC1 (XRCC1) Genomic Order:  1618
Name:  ? Phvul.005G172600 Secondary Identifier:  ? PAC:37154173
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G172600 0.5kb upstream 0.5kb upstream 4213 true Chr05: 39818507-39822719 Phaseolus vulgaris
Phvul.005G172600 0.5kb upstream 0.5kb upstream 500 false Chr05: 39818507-39819006 Phaseolus vulgaris
Phvul.005G172600 0.5kb downstream 0.5kb downstream 4213 true Chr05: 39819007-39823219 Phaseolus vulgaris
Phvul.005G172600 0.5kb downstream 0.5kb downstream 500 false Chr05: 39822720-39823219 Phaseolus vulgaris
Phvul.005G172600 1.0kb upstream 1.0kb upstream 4713 true Chr05: 39818007-39822719 Phaseolus vulgaris
Phvul.005G172600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39818007-39819006 Phaseolus vulgaris
Phvul.005G172600 1.0kb downstream 1.0kb downstream 4713 true Chr05: 39819007-39823719 Phaseolus vulgaris
Phvul.005G172600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39822720-39823719 Phaseolus vulgaris
Phvul.005G172600 2.0kb upstream 2.0kb upstream 5713 true Chr05: 39817007-39822719 Phaseolus vulgaris
Phvul.005G172600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39817007-39819006 Phaseolus vulgaris
Phvul.005G172600 2.0kb downstream 2.0kb downstream 5713 true Chr05: 39819007-39824719 Phaseolus vulgaris
Phvul.005G172600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39822720-39824719 Phaseolus vulgaris
Phvul.005G172600 5.0kb upstream 5.0kb upstream 8713 true Chr05: 39814007-39822719 Phaseolus vulgaris
Phvul.005G172600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39814007-39819006 Phaseolus vulgaris
Phvul.005G172600 5.0kb downstream 5.0kb downstream 8713 true Chr05: 39819007-39827719 Phaseolus vulgaris
Phvul.005G172600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39822720-39827719 Phaseolus vulgaris
Phvul.005G172600 10.0kb upstream 10.0kb upstream 13713 true Chr05: 39809007-39822719 Phaseolus vulgaris
Phvul.005G172600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39809007-39819006 Phaseolus vulgaris
Phvul.005G172600 10.0kb downstream 10.0kb downstream 13713 true Chr05: 39819007-39832719 Phaseolus vulgaris
Phvul.005G172600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39822720-39832719 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302854 5265 Fabidae View MSA
124064277 5270 Rosid View MSA
123745081 5271 Pentapetalae View MSA
122790473 5272 Eudicot View MSA
122046298 5273 Angiosperm View MSA
121347821 5274 Embryophyte View MSA
123380641 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.07996 0.0 12.5349   Low
cufflinks 4.67397 0.0 16.9842    
cufflinks 7.78031 0.0 26.7875   High
cufflinks 2.47351 0.0 8.47384   Low
cufflinks 4.06303 0.0 15.7518    
cufflinks 6.62637 0.0 23.2452    
cufflinks 5.94481 0.0 21.1472    
cufflinks 8.56315 0.0 28.2399   High
cufflinks 4.84092 0.0 17.2781    
cufflinks 3.16554 0.0 12.8815    
cufflinks 4.03724 0.0 15.3385    

0 Strain