Gene : Phvul.005G172900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31734:SF12 - AUXIN-RESPONSIVE PROTEIN IAA19-RELATED Genomic Order:  1621
Name:  ? Phvul.005G172900 Secondary Identifier:  ? PAC:37154482
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G172900 0.5kb upstream 0.5kb upstream 3938 true Chr05: 39857039-39860976 Phaseolus vulgaris
Phvul.005G172900 0.5kb upstream 0.5kb upstream 500 false Chr05: 39857039-39857538 Phaseolus vulgaris
Phvul.005G172900 0.5kb downstream 0.5kb downstream 3938 true Chr05: 39857539-39861476 Phaseolus vulgaris
Phvul.005G172900 0.5kb downstream 0.5kb downstream 500 false Chr05: 39860977-39861476 Phaseolus vulgaris
Phvul.005G172900 1.0kb upstream 1.0kb upstream 4438 true Chr05: 39856539-39860976 Phaseolus vulgaris
Phvul.005G172900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39856539-39857538 Phaseolus vulgaris
Phvul.005G172900 1.0kb downstream 1.0kb downstream 4438 true Chr05: 39857539-39861976 Phaseolus vulgaris
Phvul.005G172900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39860977-39861976 Phaseolus vulgaris
Phvul.005G172900 2.0kb upstream 2.0kb upstream 5438 true Chr05: 39855539-39860976 Phaseolus vulgaris
Phvul.005G172900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39855539-39857538 Phaseolus vulgaris
Phvul.005G172900 2.0kb downstream 2.0kb downstream 5438 true Chr05: 39857539-39862976 Phaseolus vulgaris
Phvul.005G172900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39860977-39862976 Phaseolus vulgaris
Phvul.005G172900 5.0kb upstream 5.0kb upstream 8438 true Chr05: 39852539-39860976 Phaseolus vulgaris
Phvul.005G172900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39852539-39857538 Phaseolus vulgaris
Phvul.005G172900 5.0kb downstream 5.0kb downstream 8438 true Chr05: 39857539-39865976 Phaseolus vulgaris
Phvul.005G172900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39860977-39865976 Phaseolus vulgaris
Phvul.005G172900 10.0kb upstream 10.0kb upstream 13438 true Chr05: 39847539-39860976 Phaseolus vulgaris
Phvul.005G172900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39847539-39857538 Phaseolus vulgaris
Phvul.005G172900 10.0kb downstream 10.0kb downstream 13438 true Chr05: 39857539-39870976 Phaseolus vulgaris
Phvul.005G172900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39860977-39870976 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310138 5265 Fabidae View MSA
124060642 5270 Rosid View MSA
123747255 5271 Pentapetalae View MSA
122788195 5272 Eudicot View MSA
122050292 5273 Angiosperm View MSA
121311842 5274 Embryophyte View MSA
123349083 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 89.1327 0.0 238.032 High High
cufflinks 17.933 0.0 47.7831    
cufflinks 6.45033 0.0 18.8888    
cufflinks 26.5725 0.0 69.2709    
cufflinks 13.523 0.0 36.9147    
cufflinks 8.84473 0.0 25.0296    
cufflinks 3.44432 0.0 10.7945   Low
cufflinks 1.65623 0.0 5.65347   Low
cufflinks 5.05421 0.0 15.1669    
cufflinks 8.64861 0.0 24.5113    
cufflinks 31.111 0.0 80.6743    

0 Strain