Gene : Phvul.005G174800 P. vulgaris v2.1
Defline:  (1 of 9) PTHR23241 - LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED Genomic Order:  1642
Name:  ? Phvul.005G174800 Secondary Identifier:  ? PAC:37153966
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G174800 0.5kb upstream 0.5kb upstream 1574 true Chr05: 40060645-40062218 Phaseolus vulgaris
Phvul.005G174800 0.5kb upstream 0.5kb upstream 500 false Chr05: 40061719-40062218 Phaseolus vulgaris
Phvul.005G174800 0.5kb downstream 0.5kb downstream 1574 true Chr05: 40060145-40061718 Phaseolus vulgaris
Phvul.005G174800 0.5kb downstream 0.5kb downstream 500 false Chr05: 40060145-40060644 Phaseolus vulgaris
Phvul.005G174800 1.0kb upstream 1.0kb upstream 2074 true Chr05: 40060645-40062718 Phaseolus vulgaris
Phvul.005G174800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40061719-40062718 Phaseolus vulgaris
Phvul.005G174800 1.0kb downstream 1.0kb downstream 2074 true Chr05: 40059645-40061718 Phaseolus vulgaris
Phvul.005G174800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40059645-40060644 Phaseolus vulgaris
Phvul.005G174800 2.0kb upstream 2.0kb upstream 3074 true Chr05: 40060645-40063718 Phaseolus vulgaris
Phvul.005G174800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40061719-40063718 Phaseolus vulgaris
Phvul.005G174800 2.0kb downstream 2.0kb downstream 3074 true Chr05: 40058645-40061718 Phaseolus vulgaris
Phvul.005G174800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40058645-40060644 Phaseolus vulgaris
Phvul.005G174800 5.0kb upstream 5.0kb upstream 6074 true Chr05: 40060645-40066718 Phaseolus vulgaris
Phvul.005G174800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40061719-40066718 Phaseolus vulgaris
Phvul.005G174800 5.0kb downstream 5.0kb downstream 6074 true Chr05: 40055645-40061718 Phaseolus vulgaris
Phvul.005G174800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40055645-40060644 Phaseolus vulgaris
Phvul.005G174800 10.0kb upstream 10.0kb upstream 11074 true Chr05: 40060645-40071718 Phaseolus vulgaris
Phvul.005G174800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40061719-40071718 Phaseolus vulgaris
Phvul.005G174800 10.0kb downstream 10.0kb downstream 11074 true Chr05: 40050645-40061718 Phaseolus vulgaris
Phvul.005G174800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40050645-40060644 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311666 5265 Fabidae View MSA
124063227 5270 Rosid View MSA
123749202 5271 Pentapetalae View MSA
122796678 5272 Eudicot View MSA
122050999 5273 Angiosperm View MSA
121350297 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.83166 0.0 6.56062    
cufflinks 3.76909 0.0 12.478   High
cufflinks 0.804033 0.0 3.09199    
cufflinks 0.896204 0.0 3.40336    
cufflinks 1.55364 0.0 5.66418    
cufflinks 0.321818 0.0 1.32731 Low Low
cufflinks 1.08205 0.0 4.02728    
cufflinks 0.319107 0.0 1.31299 Low Low
cufflinks 2.62114 0.0 8.87602    
cufflinks 1.82159 0.0 6.55562    
cufflinks 2.46687 0.0 8.53441    

0 Strain