Gene : Phvul.005G175500 P. vulgaris v2.1
Defline:  (1 of 1) K14309 - nuclear pore complex protein Nup93 (NUP93, NIC96) Genomic Order:  1650
Name:  ? Phvul.005G175500 Secondary Identifier:  ? PAC:37153372
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G175500 0.5kb upstream 0.5kb upstream 8833 true Chr05: 40093378-40102210 Phaseolus vulgaris
Phvul.005G175500 0.5kb upstream 0.5kb upstream 500 false Chr05: 40101711-40102210 Phaseolus vulgaris
Phvul.005G175500 0.5kb downstream 0.5kb downstream 8833 true Chr05: 40092878-40101710 Phaseolus vulgaris
Phvul.005G175500 0.5kb downstream 0.5kb downstream 500 false Chr05: 40092878-40093377 Phaseolus vulgaris
Phvul.005G175500 1.0kb upstream 1.0kb upstream 9333 true Chr05: 40093378-40102710 Phaseolus vulgaris
Phvul.005G175500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40101711-40102710 Phaseolus vulgaris
Phvul.005G175500 1.0kb downstream 1.0kb downstream 9333 true Chr05: 40092378-40101710 Phaseolus vulgaris
Phvul.005G175500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40092378-40093377 Phaseolus vulgaris
Phvul.005G175500 2.0kb upstream 2.0kb upstream 10333 true Chr05: 40093378-40103710 Phaseolus vulgaris
Phvul.005G175500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40101711-40103710 Phaseolus vulgaris
Phvul.005G175500 2.0kb downstream 2.0kb downstream 10333 true Chr05: 40091378-40101710 Phaseolus vulgaris
Phvul.005G175500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40091378-40093377 Phaseolus vulgaris
Phvul.005G175500 5.0kb upstream 5.0kb upstream 13333 true Chr05: 40093378-40106710 Phaseolus vulgaris
Phvul.005G175500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40101711-40106710 Phaseolus vulgaris
Phvul.005G175500 5.0kb downstream 5.0kb downstream 13333 true Chr05: 40088378-40101710 Phaseolus vulgaris
Phvul.005G175500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40088378-40093377 Phaseolus vulgaris
Phvul.005G175500 10.0kb upstream 10.0kb upstream 18333 true Chr05: 40093378-40111710 Phaseolus vulgaris
Phvul.005G175500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40101711-40111710 Phaseolus vulgaris
Phvul.005G175500 10.0kb downstream 10.0kb downstream 18333 true Chr05: 40083378-40101710 Phaseolus vulgaris
Phvul.005G175500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40083378-40093377 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300861 5265 Fabidae View MSA
124073595 5270 Rosid View MSA
123740371 5271 Pentapetalae View MSA
122788822 5272 Eudicot View MSA
122043795 5273 Angiosperm View MSA
121346539 5274 Embryophyte View MSA
123424897 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.63237 0.0 15.0975   Low
cufflinks 16.7736 0.0 43.4269   High
cufflinks 9.15062 0.0 23.8216    
cufflinks 8.99865 0.0 23.5342    
cufflinks 15.6132 0.0 40.3629    
cufflinks 11.9269 0.0 30.8578    
cufflinks 15.0245 0.0 38.8436    
cufflinks 14.154 0.0 36.5882    
cufflinks 15.499 0.0 40.0733    
cufflinks 10.3093 0.0 26.7532    
cufflinks 12.8529 0.0 33.2442    

0 Strain