Gene : Phvul.005G173900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR32370:SF16 - NON-PHOTOTROPIC HYPOCOTYL-LIKE PROTEIN Genomic Order:  1633
Name:  ? Phvul.005G173900 Secondary Identifier:  ? PAC:37152475
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G173900 0.5kb upstream 0.5kb upstream 3577 true Chr05: 39967752-39971328 Phaseolus vulgaris
Phvul.005G173900 0.5kb upstream 0.5kb upstream 500 false Chr05: 39970829-39971328 Phaseolus vulgaris
Phvul.005G173900 0.5kb downstream 0.5kb downstream 3577 true Chr05: 39967252-39970828 Phaseolus vulgaris
Phvul.005G173900 0.5kb downstream 0.5kb downstream 500 false Chr05: 39967252-39967751 Phaseolus vulgaris
Phvul.005G173900 1.0kb upstream 1.0kb upstream 4077 true Chr05: 39967752-39971828 Phaseolus vulgaris
Phvul.005G173900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39970829-39971828 Phaseolus vulgaris
Phvul.005G173900 1.0kb downstream 1.0kb downstream 4077 true Chr05: 39966752-39970828 Phaseolus vulgaris
Phvul.005G173900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39966752-39967751 Phaseolus vulgaris
Phvul.005G173900 2.0kb upstream 2.0kb upstream 5077 true Chr05: 39967752-39972828 Phaseolus vulgaris
Phvul.005G173900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39970829-39972828 Phaseolus vulgaris
Phvul.005G173900 2.0kb downstream 2.0kb downstream 5077 true Chr05: 39965752-39970828 Phaseolus vulgaris
Phvul.005G173900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39965752-39967751 Phaseolus vulgaris
Phvul.005G173900 5.0kb upstream 5.0kb upstream 8077 true Chr05: 39967752-39975828 Phaseolus vulgaris
Phvul.005G173900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39970829-39975828 Phaseolus vulgaris
Phvul.005G173900 5.0kb downstream 5.0kb downstream 8077 true Chr05: 39962752-39970828 Phaseolus vulgaris
Phvul.005G173900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39962752-39967751 Phaseolus vulgaris
Phvul.005G173900 10.0kb upstream 10.0kb upstream 13077 true Chr05: 39967752-39980828 Phaseolus vulgaris
Phvul.005G173900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39970829-39980828 Phaseolus vulgaris
Phvul.005G173900 10.0kb downstream 10.0kb downstream 13077 true Chr05: 39957752-39970828 Phaseolus vulgaris
Phvul.005G173900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39957752-39967751 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313686 5265 Fabidae View MSA
124065820 5270 Rosid View MSA
123742198 5271 Pentapetalae View MSA
122787661 5272 Eudicot View MSA
122051145 5273 Angiosperm View MSA
121347829 5274 Embryophyte View MSA
123380647 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.95209 0.0 3.4102    
cufflinks 1.81566 0.0 6.03742   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 6.0563 0.0 17.5714   High
cufflinks 0.0417347 0.0 0.195967 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.221873 0.0 0.891405 Low  
cufflinks 0.171409 0.0 0.705276 Low  
cufflinks 0.209834 0.0 0.846891 Low  
cufflinks 0.159957 0.0 0.661506 Low  
cufflinks 0.226518 0.0 0.909976 Low  

0 Strain