Gene : Phvul.005G177000 P. vulgaris v2.1
Defline:  (1 of 57) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  1670
Name:  ? Phvul.005G177000 Secondary Identifier:  ? PAC:37153630
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G177000 0.5kb upstream 0.5kb upstream 4456 true Chr05: 40302725-40307180 Phaseolus vulgaris
Phvul.005G177000 0.5kb upstream 0.5kb upstream 500 false Chr05: 40306681-40307180 Phaseolus vulgaris
Phvul.005G177000 0.5kb downstream 0.5kb downstream 4456 true Chr05: 40302225-40306680 Phaseolus vulgaris
Phvul.005G177000 0.5kb downstream 0.5kb downstream 500 false Chr05: 40302225-40302724 Phaseolus vulgaris
Phvul.005G177000 1.0kb upstream 1.0kb upstream 4956 true Chr05: 40302725-40307680 Phaseolus vulgaris
Phvul.005G177000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40306681-40307680 Phaseolus vulgaris
Phvul.005G177000 1.0kb downstream 1.0kb downstream 4956 true Chr05: 40301725-40306680 Phaseolus vulgaris
Phvul.005G177000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40301725-40302724 Phaseolus vulgaris
Phvul.005G177000 2.0kb upstream 2.0kb upstream 5956 true Chr05: 40302725-40308680 Phaseolus vulgaris
Phvul.005G177000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40306681-40308680 Phaseolus vulgaris
Phvul.005G177000 2.0kb downstream 2.0kb downstream 5956 true Chr05: 40300725-40306680 Phaseolus vulgaris
Phvul.005G177000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40300725-40302724 Phaseolus vulgaris
Phvul.005G177000 5.0kb upstream 5.0kb upstream 8956 true Chr05: 40302725-40311680 Phaseolus vulgaris
Phvul.005G177000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40306681-40311680 Phaseolus vulgaris
Phvul.005G177000 5.0kb downstream 5.0kb downstream 8956 true Chr05: 40297725-40306680 Phaseolus vulgaris
Phvul.005G177000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40297725-40302724 Phaseolus vulgaris
Phvul.005G177000 10.0kb upstream 10.0kb upstream 13956 true Chr05: 40302725-40316680 Phaseolus vulgaris
Phvul.005G177000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40306681-40316680 Phaseolus vulgaris
Phvul.005G177000 10.0kb downstream 10.0kb downstream 13956 true Chr05: 40292725-40306680 Phaseolus vulgaris
Phvul.005G177000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40292725-40302724 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314178 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.09122 0.0 13.723    
cufflinks 0.535386 0.0 3.48189   Low
cufflinks 11.64 0.0 42.2751    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain