Gene : Phvul.005G175800 P. vulgaris v2.1
Defline:  (1 of 57) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  1653
Name:  ? Phvul.005G175800 Secondary Identifier:  ? PAC:37153540
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G175800 0.5kb upstream 0.5kb upstream 3738 true Chr05: 40128206-40131943 Phaseolus vulgaris
Phvul.005G175800 0.5kb upstream 0.5kb upstream 500 false Chr05: 40128206-40128705 Phaseolus vulgaris
Phvul.005G175800 0.5kb downstream 0.5kb downstream 3738 true Chr05: 40128706-40132443 Phaseolus vulgaris
Phvul.005G175800 0.5kb downstream 0.5kb downstream 500 false Chr05: 40131944-40132443 Phaseolus vulgaris
Phvul.005G175800 1.0kb upstream 1.0kb upstream 4238 true Chr05: 40127706-40131943 Phaseolus vulgaris
Phvul.005G175800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40127706-40128705 Phaseolus vulgaris
Phvul.005G175800 1.0kb downstream 1.0kb downstream 4238 true Chr05: 40128706-40132943 Phaseolus vulgaris
Phvul.005G175800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40131944-40132943 Phaseolus vulgaris
Phvul.005G175800 2.0kb upstream 2.0kb upstream 5238 true Chr05: 40126706-40131943 Phaseolus vulgaris
Phvul.005G175800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40126706-40128705 Phaseolus vulgaris
Phvul.005G175800 2.0kb downstream 2.0kb downstream 5238 true Chr05: 40128706-40133943 Phaseolus vulgaris
Phvul.005G175800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40131944-40133943 Phaseolus vulgaris
Phvul.005G175800 5.0kb upstream 5.0kb upstream 8238 true Chr05: 40123706-40131943 Phaseolus vulgaris
Phvul.005G175800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40123706-40128705 Phaseolus vulgaris
Phvul.005G175800 5.0kb downstream 5.0kb downstream 8238 true Chr05: 40128706-40136943 Phaseolus vulgaris
Phvul.005G175800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40131944-40136943 Phaseolus vulgaris
Phvul.005G175800 10.0kb upstream 10.0kb upstream 13238 true Chr05: 40118706-40131943 Phaseolus vulgaris
Phvul.005G175800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40118706-40128705 Phaseolus vulgaris
Phvul.005G175800 10.0kb downstream 10.0kb downstream 13238 true Chr05: 40128706-40141943 Phaseolus vulgaris
Phvul.005G175800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40131944-40141943 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306699 5265 Fabidae View MSA
124062237 5270 Rosid View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.691798 0.0 2.49118   Low
cufflinks 1.36586 0.0 4.58415    
cufflinks 1.48505 0.0 4.94348    
cufflinks 0.65073 0.0 2.37534   Low
cufflinks 1.06859 0.0 3.71896    
cufflinks 1.55769 0.0 5.15756    
cufflinks 1.60796 0.0 5.28834    
cufflinks 1.33414 0.0 4.45339    
cufflinks 1.15301 0.0 3.95001    
cufflinks 1.90284 0.0 6.16024   High
cufflinks 1.8884 0.0 6.14124   High

0 Strain