Gene : Phvul.005G178700 P. vulgaris v2.1
Defline:  (1 of 4) PF02845 - CUE domain (CUE) Genomic Order:  1687
Name:  ? Phvul.005G178700 Secondary Identifier:  ? PAC:37152503
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G178700 0.5kb upstream 0.5kb upstream 2900 true Chr05: 40420930-40423829 Phaseolus vulgaris
Phvul.005G178700 0.5kb upstream 0.5kb upstream 500 false Chr05: 40420930-40421429 Phaseolus vulgaris
Phvul.005G178700 0.5kb downstream 0.5kb downstream 2900 true Chr05: 40421430-40424329 Phaseolus vulgaris
Phvul.005G178700 0.5kb downstream 0.5kb downstream 500 false Chr05: 40423830-40424329 Phaseolus vulgaris
Phvul.005G178700 1.0kb upstream 1.0kb upstream 3400 true Chr05: 40420430-40423829 Phaseolus vulgaris
Phvul.005G178700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40420430-40421429 Phaseolus vulgaris
Phvul.005G178700 1.0kb downstream 1.0kb downstream 3400 true Chr05: 40421430-40424829 Phaseolus vulgaris
Phvul.005G178700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40423830-40424829 Phaseolus vulgaris
Phvul.005G178700 2.0kb upstream 2.0kb upstream 4400 true Chr05: 40419430-40423829 Phaseolus vulgaris
Phvul.005G178700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40419430-40421429 Phaseolus vulgaris
Phvul.005G178700 2.0kb downstream 2.0kb downstream 4400 true Chr05: 40421430-40425829 Phaseolus vulgaris
Phvul.005G178700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40423830-40425829 Phaseolus vulgaris
Phvul.005G178700 5.0kb upstream 5.0kb upstream 7400 true Chr05: 40416430-40423829 Phaseolus vulgaris
Phvul.005G178700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40416430-40421429 Phaseolus vulgaris
Phvul.005G178700 5.0kb downstream 5.0kb downstream 7400 true Chr05: 40421430-40428829 Phaseolus vulgaris
Phvul.005G178700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40423830-40428829 Phaseolus vulgaris
Phvul.005G178700 10.0kb upstream 10.0kb upstream 12400 true Chr05: 40411430-40423829 Phaseolus vulgaris
Phvul.005G178700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40411430-40421429 Phaseolus vulgaris
Phvul.005G178700 10.0kb downstream 10.0kb downstream 12400 true Chr05: 40421430-40433829 Phaseolus vulgaris
Phvul.005G178700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40423830-40433829 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309652 5265 Fabidae View MSA
124074817 5270 Rosid View MSA
123743103 5271 Pentapetalae View MSA
122794733 5272 Eudicot View MSA
122042927 5273 Angiosperm View MSA
121343800 5274 Embryophyte View MSA
123427997 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.1539 0.0 155.783 High High
cufflinks 30.6837 0.0 79.3211    
cufflinks 31.0495 0.0 80.2656    
cufflinks 45.9352 0.0 119.445 High High
cufflinks 28.3483 0.0 73.3798    
cufflinks 25.1138 0.0 65.0933   Low
cufflinks 27.9425 0.0 72.276 High  
cufflinks 26.9075 0.0 69.6283    
cufflinks 33.224 0.0 85.8817 High  
cufflinks 29.645 0.0 76.6526    
cufflinks 33.3538 0.0 86.2133    

0 Strain