Gene : Phvul.010G039000 P. vulgaris v2.1
Defline:  (1 of 3) PTHR31375:SF2 - POLYGALACTURONASE/PECTINASE Genomic Order:  382
Name:  ? Phvul.010G039000 Secondary Identifier:  ? PAC:37143512
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G039000 0.5kb upstream 0.5kb upstream 3487 true Chr10: 5744625-5748111 Phaseolus vulgaris
Phvul.010G039000 0.5kb upstream 0.5kb upstream 500 false Chr10: 5747612-5748111 Phaseolus vulgaris
Phvul.010G039000 0.5kb downstream 0.5kb downstream 3487 true Chr10: 5744125-5747611 Phaseolus vulgaris
Phvul.010G039000 0.5kb downstream 0.5kb downstream 500 false Chr10: 5744125-5744624 Phaseolus vulgaris
Phvul.010G039000 1.0kb upstream 1.0kb upstream 3987 true Chr10: 5744625-5748611 Phaseolus vulgaris
Phvul.010G039000 1.0kb upstream 1.0kb upstream 1000 false Chr10: 5747612-5748611 Phaseolus vulgaris
Phvul.010G039000 1.0kb downstream 1.0kb downstream 3987 true Chr10: 5743625-5747611 Phaseolus vulgaris
Phvul.010G039000 1.0kb downstream 1.0kb downstream 1000 false Chr10: 5743625-5744624 Phaseolus vulgaris
Phvul.010G039000 2.0kb upstream 2.0kb upstream 4987 true Chr10: 5744625-5749611 Phaseolus vulgaris
Phvul.010G039000 2.0kb upstream 2.0kb upstream 2000 false Chr10: 5747612-5749611 Phaseolus vulgaris
Phvul.010G039000 2.0kb downstream 2.0kb downstream 4987 true Chr10: 5742625-5747611 Phaseolus vulgaris
Phvul.010G039000 2.0kb downstream 2.0kb downstream 2000 false Chr10: 5742625-5744624 Phaseolus vulgaris
Phvul.010G039000 5.0kb upstream 5.0kb upstream 7987 true Chr10: 5744625-5752611 Phaseolus vulgaris
Phvul.010G039000 5.0kb upstream 5.0kb upstream 5000 false Chr10: 5747612-5752611 Phaseolus vulgaris
Phvul.010G039000 5.0kb downstream 5.0kb downstream 7987 true Chr10: 5739625-5747611 Phaseolus vulgaris
Phvul.010G039000 5.0kb downstream 5.0kb downstream 5000 false Chr10: 5739625-5744624 Phaseolus vulgaris
Phvul.010G039000 10.0kb upstream 10.0kb upstream 12987 true Chr10: 5744625-5757611 Phaseolus vulgaris
Phvul.010G039000 10.0kb upstream 10.0kb upstream 10000 false Chr10: 5747612-5757611 Phaseolus vulgaris
Phvul.010G039000 10.0kb downstream 10.0kb downstream 12987 true Chr10: 5734625-5747611 Phaseolus vulgaris
Phvul.010G039000 10.0kb downstream 10.0kb downstream 10000 false Chr10: 5734625-5744624 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314468 5265 Fabidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0336887 0.0 0.166961 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain