Gene : Phvul.005G179000 P. vulgaris v2.1
Defline:  (1 of 3) K03106 - signal recognition particle subunit SRP54 (SRP54, ffh) Genomic Order:  1690
Name:  ? Phvul.005G179000 Secondary Identifier:  ? PAC:37154228
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G179000 0.5kb upstream 0.5kb upstream 4360 true Chr05: 40435027-40439386 Phaseolus vulgaris
Phvul.005G179000 0.5kb upstream 0.5kb upstream 500 false Chr05: 40435027-40435526 Phaseolus vulgaris
Phvul.005G179000 0.5kb downstream 0.5kb downstream 4360 true Chr05: 40435527-40439886 Phaseolus vulgaris
Phvul.005G179000 0.5kb downstream 0.5kb downstream 500 false Chr05: 40439387-40439886 Phaseolus vulgaris
Phvul.005G179000 1.0kb upstream 1.0kb upstream 4860 true Chr05: 40434527-40439386 Phaseolus vulgaris
Phvul.005G179000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40434527-40435526 Phaseolus vulgaris
Phvul.005G179000 1.0kb downstream 1.0kb downstream 4860 true Chr05: 40435527-40440386 Phaseolus vulgaris
Phvul.005G179000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40439387-40440386 Phaseolus vulgaris
Phvul.005G179000 2.0kb upstream 2.0kb upstream 5860 true Chr05: 40433527-40439386 Phaseolus vulgaris
Phvul.005G179000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40433527-40435526 Phaseolus vulgaris
Phvul.005G179000 2.0kb downstream 2.0kb downstream 5860 true Chr05: 40435527-40441386 Phaseolus vulgaris
Phvul.005G179000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40439387-40441386 Phaseolus vulgaris
Phvul.005G179000 5.0kb upstream 5.0kb upstream 8860 true Chr05: 40430527-40439386 Phaseolus vulgaris
Phvul.005G179000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40430527-40435526 Phaseolus vulgaris
Phvul.005G179000 5.0kb downstream 5.0kb downstream 8860 true Chr05: 40435527-40444386 Phaseolus vulgaris
Phvul.005G179000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40439387-40444386 Phaseolus vulgaris
Phvul.005G179000 10.0kb upstream 10.0kb upstream 13860 true Chr05: 40425527-40439386 Phaseolus vulgaris
Phvul.005G179000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40425527-40435526 Phaseolus vulgaris
Phvul.005G179000 10.0kb downstream 10.0kb downstream 13860 true Chr05: 40435527-40449386 Phaseolus vulgaris
Phvul.005G179000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40439387-40449386 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253657 5265 Fabidae View MSA
124067958 5270 Rosid View MSA
123743632 5271 Pentapetalae View MSA
122786990 5272 Eudicot View MSA
122048939 5273 Angiosperm View MSA
121348760 5274 Embryophyte View MSA
123426502 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.7272 0.0 38.2995   Low
cufflinks 16.9217 0.0 43.8558    
cufflinks 15.4408 0.0 40.1041    
cufflinks 16.3189 0.0 42.4105    
cufflinks 13.9613 0.0 36.4715   Low
cufflinks 15.2686 0.0 39.6756    
cufflinks 21.3166 0.0 55.1005   High
cufflinks 19.1749 0.0 49.5733    
cufflinks 21.6219 0.0 55.8908   High
cufflinks 16.4095 0.0 42.5661    
cufflinks 20.3369 0.0 52.5846   High

0 Strain