Gene : Phvul.010G038400 P. vulgaris v2.1
Defline:  (1 of 2) 6.1.1.17 - Glutamate--tRNA ligase / Glutamyl-tRNA synthetase Genomic Order:  376
Name:  ? Phvul.010G038400 Secondary Identifier:  ? PAC:37142442
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5188 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5918 Phaseolus vulgaris pathologic  
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G038400 0.5kb upstream 0.5kb upstream 8310 true Chr10: 5683578-5691887 Phaseolus vulgaris
Phvul.010G038400 0.5kb upstream 0.5kb upstream 500 false Chr10: 5691388-5691887 Phaseolus vulgaris
Phvul.010G038400 0.5kb downstream 0.5kb downstream 8310 true Chr10: 5683078-5691387 Phaseolus vulgaris
Phvul.010G038400 0.5kb downstream 0.5kb downstream 500 false Chr10: 5683078-5683577 Phaseolus vulgaris
Phvul.010G038400 1.0kb upstream 1.0kb upstream 8810 true Chr10: 5683578-5692387 Phaseolus vulgaris
Phvul.010G038400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 5691388-5692387 Phaseolus vulgaris
Phvul.010G038400 1.0kb downstream 1.0kb downstream 8810 true Chr10: 5682578-5691387 Phaseolus vulgaris
Phvul.010G038400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 5682578-5683577 Phaseolus vulgaris
Phvul.010G038400 2.0kb upstream 2.0kb upstream 9810 true Chr10: 5683578-5693387 Phaseolus vulgaris
Phvul.010G038400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 5691388-5693387 Phaseolus vulgaris
Phvul.010G038400 2.0kb downstream 2.0kb downstream 9810 true Chr10: 5681578-5691387 Phaseolus vulgaris
Phvul.010G038400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 5681578-5683577 Phaseolus vulgaris
Phvul.010G038400 5.0kb upstream 5.0kb upstream 12810 true Chr10: 5683578-5696387 Phaseolus vulgaris
Phvul.010G038400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 5691388-5696387 Phaseolus vulgaris
Phvul.010G038400 5.0kb downstream 5.0kb downstream 12810 true Chr10: 5678578-5691387 Phaseolus vulgaris
Phvul.010G038400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 5678578-5683577 Phaseolus vulgaris
Phvul.010G038400 10.0kb upstream 10.0kb upstream 17810 true Chr10: 5683578-5701387 Phaseolus vulgaris
Phvul.010G038400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 5691388-5701387 Phaseolus vulgaris
Phvul.010G038400 10.0kb downstream 10.0kb downstream 17810 true Chr10: 5673578-5691387 Phaseolus vulgaris
Phvul.010G038400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 5673578-5683577 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301417 5265 Fabidae View MSA
124063360 5270 Rosid View MSA
123737264 5271 Pentapetalae View MSA
122787973 5272 Eudicot View MSA
122041760 5273 Angiosperm View MSA
121345245 5274 Embryophyte View MSA
123424323 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.5227 0.0 54.3368    
cufflinks 22.9021 0.0 63.6484    
cufflinks 37.651 0.0 110.147   High
cufflinks 21.4409 0.0 59.7063    
cufflinks 14.0031 0.0 39.6606    
cufflinks 32.1721 0.0 92.3359   High
cufflinks 8.63625 0.0 25.4649   Low
cufflinks 13.4344 0.0 44.0105    
cufflinks 8.49217 0.0 29.3528   Low
cufflinks 18.3917 0.0 51.1245    
cufflinks 11.6798 0.0 33.3028    

0 Strain