Gene : Phvul.005G179100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10555//PTHR10555:SF154 - SORTING NEXIN // SUBFAMILY NOT NAMED Genomic Order:  1691
Name:  ? Phvul.005G179100 Secondary Identifier:  ? PAC:37153869
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G179100 0.5kb upstream 0.5kb upstream 5089 true Chr05: 40439898-40444986 Phaseolus vulgaris
Phvul.005G179100 0.5kb upstream 0.5kb upstream 500 false Chr05: 40444487-40444986 Phaseolus vulgaris
Phvul.005G179100 0.5kb downstream 0.5kb downstream 5089 true Chr05: 40439398-40444486 Phaseolus vulgaris
Phvul.005G179100 0.5kb downstream 0.5kb downstream 500 false Chr05: 40439398-40439897 Phaseolus vulgaris
Phvul.005G179100 1.0kb upstream 1.0kb upstream 5589 true Chr05: 40439898-40445486 Phaseolus vulgaris
Phvul.005G179100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40444487-40445486 Phaseolus vulgaris
Phvul.005G179100 1.0kb downstream 1.0kb downstream 5589 true Chr05: 40438898-40444486 Phaseolus vulgaris
Phvul.005G179100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40438898-40439897 Phaseolus vulgaris
Phvul.005G179100 2.0kb upstream 2.0kb upstream 6589 true Chr05: 40439898-40446486 Phaseolus vulgaris
Phvul.005G179100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40444487-40446486 Phaseolus vulgaris
Phvul.005G179100 2.0kb downstream 2.0kb downstream 6589 true Chr05: 40437898-40444486 Phaseolus vulgaris
Phvul.005G179100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40437898-40439897 Phaseolus vulgaris
Phvul.005G179100 5.0kb upstream 5.0kb upstream 9589 true Chr05: 40439898-40449486 Phaseolus vulgaris
Phvul.005G179100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40444487-40449486 Phaseolus vulgaris
Phvul.005G179100 5.0kb downstream 5.0kb downstream 9589 true Chr05: 40434898-40444486 Phaseolus vulgaris
Phvul.005G179100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40434898-40439897 Phaseolus vulgaris
Phvul.005G179100 10.0kb upstream 10.0kb upstream 14589 true Chr05: 40439898-40454486 Phaseolus vulgaris
Phvul.005G179100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40444487-40454486 Phaseolus vulgaris
Phvul.005G179100 10.0kb downstream 10.0kb downstream 14589 true Chr05: 40429898-40444486 Phaseolus vulgaris
Phvul.005G179100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40429898-40439897 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308974 5265 Fabidae View MSA
124072497 5270 Rosid View MSA
123742231 5271 Pentapetalae View MSA
122788669 5272 Eudicot View MSA
122047389 5273 Angiosperm View MSA
121347032 5274 Embryophyte View MSA
123428611 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.82994 0.0 18.4575   Low
cufflinks 8.53956 0.0 22.7122    
cufflinks 12.749 0.0 33.1482    
cufflinks 5.67574 0.0 15.6754   Low
cufflinks 9.1909 0.0 24.4056    
cufflinks 10.6277 0.0 27.8743    
cufflinks 11.5832 0.0 30.23    
cufflinks 12.4458 0.0 32.3527    
cufflinks 10.5113 0.0 27.5805    
cufflinks 18.7958 0.0 48.584   High
cufflinks 8.70806 0.0 23.1989    

0 Strain