Gene : Phvul.005G179300 P. vulgaris v2.1
Defline:  (1 of 1) 3.2.2.23 - DNA-formamidopyrimidine glycosylase / Formamidopyrimidine-DNA glycosylase Genomic Order:  1692
Name:  ? Phvul.005G179300 Secondary Identifier:  ? PAC:37152840
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G179300 0.5kb upstream 0.5kb upstream 6310 true Chr05: 40455316-40461625 Phaseolus vulgaris
Phvul.005G179300 0.5kb upstream 0.5kb upstream 500 false Chr05: 40461126-40461625 Phaseolus vulgaris
Phvul.005G179300 0.5kb downstream 0.5kb downstream 6310 true Chr05: 40454816-40461125 Phaseolus vulgaris
Phvul.005G179300 0.5kb downstream 0.5kb downstream 500 false Chr05: 40454816-40455315 Phaseolus vulgaris
Phvul.005G179300 1.0kb upstream 1.0kb upstream 6810 true Chr05: 40455316-40462125 Phaseolus vulgaris
Phvul.005G179300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40461126-40462125 Phaseolus vulgaris
Phvul.005G179300 1.0kb downstream 1.0kb downstream 6810 true Chr05: 40454316-40461125 Phaseolus vulgaris
Phvul.005G179300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40454316-40455315 Phaseolus vulgaris
Phvul.005G179300 2.0kb upstream 2.0kb upstream 7810 true Chr05: 40455316-40463125 Phaseolus vulgaris
Phvul.005G179300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40461126-40463125 Phaseolus vulgaris
Phvul.005G179300 2.0kb downstream 2.0kb downstream 7810 true Chr05: 40453316-40461125 Phaseolus vulgaris
Phvul.005G179300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40453316-40455315 Phaseolus vulgaris
Phvul.005G179300 5.0kb upstream 5.0kb upstream 10810 true Chr05: 40455316-40466125 Phaseolus vulgaris
Phvul.005G179300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40461126-40466125 Phaseolus vulgaris
Phvul.005G179300 5.0kb downstream 5.0kb downstream 10810 true Chr05: 40450316-40461125 Phaseolus vulgaris
Phvul.005G179300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40450316-40455315 Phaseolus vulgaris
Phvul.005G179300 10.0kb upstream 10.0kb upstream 15810 true Chr05: 40455316-40471125 Phaseolus vulgaris
Phvul.005G179300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40461126-40471125 Phaseolus vulgaris
Phvul.005G179300 10.0kb downstream 10.0kb downstream 15810 true Chr05: 40445316-40461125 Phaseolus vulgaris
Phvul.005G179300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40445316-40455315 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300031 5265 Fabidae View MSA
124069357 5270 Rosid View MSA
123741491 5271 Pentapetalae View MSA
122770061 5272 Eudicot View MSA
122048986 5273 Angiosperm View MSA
121348452 5274 Embryophyte View MSA
123427632 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.74089 0.0 10.1227    
cufflinks 5.17703 0.0 23.3992   High
cufflinks 1.44447 0.0 9.63361    
cufflinks 1.21846 0.0 6.25696    
cufflinks 1.57165 0.0 7.59135    
cufflinks 3.05064 0.0 14.5662    
cufflinks 1.32972 0.0 6.48898    
cufflinks 1.71145 0.0 7.79968    
cufflinks 1.32532 0.0 8.27633    
cufflinks 0.308868 0.0 2.1229 Low Low
cufflinks 2.77339 0.0 14.324    

0 Strain