Gene : Phvul.005G178300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13780:SF51 - SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA-LIKE PV42A-RELATED Genomic Order:  1683
Name:  ? Phvul.005G178300 Secondary Identifier:  ? PAC:37153553
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G178300 0.5kb upstream 0.5kb upstream 4299 true Chr05: 40392236-40396534 Phaseolus vulgaris
Phvul.005G178300 0.5kb upstream 0.5kb upstream 500 false Chr05: 40396035-40396534 Phaseolus vulgaris
Phvul.005G178300 0.5kb downstream 0.5kb downstream 4299 true Chr05: 40391736-40396034 Phaseolus vulgaris
Phvul.005G178300 0.5kb downstream 0.5kb downstream 500 false Chr05: 40391736-40392235 Phaseolus vulgaris
Phvul.005G178300 1.0kb upstream 1.0kb upstream 4799 true Chr05: 40392236-40397034 Phaseolus vulgaris
Phvul.005G178300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40396035-40397034 Phaseolus vulgaris
Phvul.005G178300 1.0kb downstream 1.0kb downstream 4799 true Chr05: 40391236-40396034 Phaseolus vulgaris
Phvul.005G178300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40391236-40392235 Phaseolus vulgaris
Phvul.005G178300 2.0kb upstream 2.0kb upstream 5799 true Chr05: 40392236-40398034 Phaseolus vulgaris
Phvul.005G178300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40396035-40398034 Phaseolus vulgaris
Phvul.005G178300 2.0kb downstream 2.0kb downstream 5799 true Chr05: 40390236-40396034 Phaseolus vulgaris
Phvul.005G178300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40390236-40392235 Phaseolus vulgaris
Phvul.005G178300 5.0kb upstream 5.0kb upstream 8799 true Chr05: 40392236-40401034 Phaseolus vulgaris
Phvul.005G178300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40396035-40401034 Phaseolus vulgaris
Phvul.005G178300 5.0kb downstream 5.0kb downstream 8799 true Chr05: 40387236-40396034 Phaseolus vulgaris
Phvul.005G178300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40387236-40392235 Phaseolus vulgaris
Phvul.005G178300 10.0kb upstream 10.0kb upstream 13799 true Chr05: 40392236-40406034 Phaseolus vulgaris
Phvul.005G178300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40396035-40406034 Phaseolus vulgaris
Phvul.005G178300 10.0kb downstream 10.0kb downstream 13799 true Chr05: 40382236-40396034 Phaseolus vulgaris
Phvul.005G178300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40382236-40392235 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302654 5265 Fabidae View MSA
124061084 5270 Rosid View MSA
123738875 5271 Pentapetalae View MSA
122797482 5272 Eudicot View MSA
122042639 5273 Angiosperm View MSA
121347644 5274 Embryophyte View MSA
123427907 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.673205 0.0 3.19553    
cufflinks 2.20049 0.0 17.1412   High
cufflinks 0.445716 0.0 2.71629 Low  
cufflinks 0.386312 0.0 1.81957 Low  
cufflinks 0.237285 0.0 4.74024 Low  
cufflinks 1.51381 0.0 19.8012   High
cufflinks 0.237743 0.0 1.86056 Low  
cufflinks 0.431059 0.0 1.73421 Low  
cufflinks 0.140719 0.0 0.602841 Low Low
cufflinks 0.443403 0.0 2.89389    
cufflinks 0.436396 0.0 5.06794 Low  

0 Strain