Gene : Phvul.005G168600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10996//PTHR10996:SF139 - 2-HYDROXYACID DEHYDROGENASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1578
Name:  ? Phvul.005G168600 Secondary Identifier:  ? PAC:37152876
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5049 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G168600 0.5kb upstream 0.5kb upstream 2738 true Chr05: 39519866-39522603 Phaseolus vulgaris
Phvul.005G168600 0.5kb upstream 0.5kb upstream 500 false Chr05: 39522104-39522603 Phaseolus vulgaris
Phvul.005G168600 0.5kb downstream 0.5kb downstream 2738 true Chr05: 39519366-39522103 Phaseolus vulgaris
Phvul.005G168600 0.5kb downstream 0.5kb downstream 500 false Chr05: 39519366-39519865 Phaseolus vulgaris
Phvul.005G168600 1.0kb upstream 1.0kb upstream 3238 true Chr05: 39519866-39523103 Phaseolus vulgaris
Phvul.005G168600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39522104-39523103 Phaseolus vulgaris
Phvul.005G168600 1.0kb downstream 1.0kb downstream 3238 true Chr05: 39518866-39522103 Phaseolus vulgaris
Phvul.005G168600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39518866-39519865 Phaseolus vulgaris
Phvul.005G168600 2.0kb upstream 2.0kb upstream 4238 true Chr05: 39519866-39524103 Phaseolus vulgaris
Phvul.005G168600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39522104-39524103 Phaseolus vulgaris
Phvul.005G168600 2.0kb downstream 2.0kb downstream 4238 true Chr05: 39517866-39522103 Phaseolus vulgaris
Phvul.005G168600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39517866-39519865 Phaseolus vulgaris
Phvul.005G168600 5.0kb upstream 5.0kb upstream 7238 true Chr05: 39519866-39527103 Phaseolus vulgaris
Phvul.005G168600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39522104-39527103 Phaseolus vulgaris
Phvul.005G168600 5.0kb downstream 5.0kb downstream 7238 true Chr05: 39514866-39522103 Phaseolus vulgaris
Phvul.005G168600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39514866-39519865 Phaseolus vulgaris
Phvul.005G168600 10.0kb upstream 10.0kb upstream 12238 true Chr05: 39519866-39532103 Phaseolus vulgaris
Phvul.005G168600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39522104-39532103 Phaseolus vulgaris
Phvul.005G168600 10.0kb downstream 10.0kb downstream 12238 true Chr05: 39509866-39522103 Phaseolus vulgaris
Phvul.005G168600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39509866-39519865 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779682 5273 Angiosperm View MSA
122297662 5265 Fabidae View MSA
124039025 5270 Rosid View MSA
123743805 5271 Pentapetalae View MSA
122770776 5272 Eudicot View MSA
121349350 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.601 0.0 10.7276   Low
cufflinks 5.69304 0.0 16.1552    
cufflinks 36.8139 0.0 95.5194   High
cufflinks 5.81179 0.0 16.4542    
cufflinks 8.64693 0.0 23.6265    
cufflinks 13.4155 0.0 35.4684    
cufflinks 7.12558 0.0 19.7076    
cufflinks 4.83692 0.0 13.8984    
cufflinks 6.59081 0.0 18.389    
cufflinks 4.25431 0.0 12.4637    
cufflinks 7.22749 0.0 20.0277    

0 Strain