Gene : Phvul.005G168900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR24326:SF272 - HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 Genomic Order:  1581
Name:  ? Phvul.005G168900 Secondary Identifier:  ? PAC:37153397
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G168900 0.5kb upstream 0.5kb upstream 6027 true Chr05: 39531387-39537413 Phaseolus vulgaris
Phvul.005G168900 0.5kb upstream 0.5kb upstream 500 false Chr05: 39536914-39537413 Phaseolus vulgaris
Phvul.005G168900 0.5kb downstream 0.5kb downstream 6027 true Chr05: 39530887-39536913 Phaseolus vulgaris
Phvul.005G168900 0.5kb downstream 0.5kb downstream 500 false Chr05: 39530887-39531386 Phaseolus vulgaris
Phvul.005G168900 1.0kb upstream 1.0kb upstream 6527 true Chr05: 39531387-39537913 Phaseolus vulgaris
Phvul.005G168900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39536914-39537913 Phaseolus vulgaris
Phvul.005G168900 1.0kb downstream 1.0kb downstream 6527 true Chr05: 39530387-39536913 Phaseolus vulgaris
Phvul.005G168900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39530387-39531386 Phaseolus vulgaris
Phvul.005G168900 2.0kb upstream 2.0kb upstream 7527 true Chr05: 39531387-39538913 Phaseolus vulgaris
Phvul.005G168900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39536914-39538913 Phaseolus vulgaris
Phvul.005G168900 2.0kb downstream 2.0kb downstream 7527 true Chr05: 39529387-39536913 Phaseolus vulgaris
Phvul.005G168900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39529387-39531386 Phaseolus vulgaris
Phvul.005G168900 5.0kb upstream 5.0kb upstream 10527 true Chr05: 39531387-39541913 Phaseolus vulgaris
Phvul.005G168900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39536914-39541913 Phaseolus vulgaris
Phvul.005G168900 5.0kb downstream 5.0kb downstream 10527 true Chr05: 39526387-39536913 Phaseolus vulgaris
Phvul.005G168900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39526387-39531386 Phaseolus vulgaris
Phvul.005G168900 10.0kb upstream 10.0kb upstream 15527 true Chr05: 39531387-39546913 Phaseolus vulgaris
Phvul.005G168900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39536914-39546913 Phaseolus vulgaris
Phvul.005G168900 10.0kb downstream 10.0kb downstream 15527 true Chr05: 39521387-39536913 Phaseolus vulgaris
Phvul.005G168900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39521387-39531386 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304917 5265 Fabidae View MSA
124070351 5270 Rosid View MSA
123746219 5271 Pentapetalae View MSA
122794350 5272 Eudicot View MSA
122048483 5273 Angiosperm View MSA
121350910 5274 Embryophyte View MSA
123381934 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.62646 0.0 19.5957   High
cufflinks 5.2643 0.0 16.2042    
cufflinks 0.486658 0.0 2.04202 Low  
cufflinks 4.13207 0.0 13.2672    
cufflinks 0.90274 0.0 3.3103    
cufflinks 3.96388 0.0 14.8352    
cufflinks 0.0666557 0.0 0.275035 Low Low
cufflinks 0.0661311 0.0 0.272286 Low Low
cufflinks 0.083325 0.0 0.336318 Low Low
cufflinks 2.09558 0.0 7.69299    
cufflinks 2.19825 0.0 8.04243    

0 Strain