Gene : Phvul.005G170900 P. vulgaris v2.1
Defline:  (1 of 3) K07889 - Ras-related protein Rab-5C (RAB5C) Genomic Order:  1601
Name:  ? Phvul.005G170900 Secondary Identifier:  ? PAC:37152550
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G170900 0.5kb upstream 0.5kb upstream 4315 true Chr05: 39683519-39687833 Phaseolus vulgaris
Phvul.005G170900 0.5kb upstream 0.5kb upstream 500 false Chr05: 39687334-39687833 Phaseolus vulgaris
Phvul.005G170900 0.5kb downstream 0.5kb downstream 4315 true Chr05: 39683019-39687333 Phaseolus vulgaris
Phvul.005G170900 0.5kb downstream 0.5kb downstream 500 false Chr05: 39683019-39683518 Phaseolus vulgaris
Phvul.005G170900 1.0kb upstream 1.0kb upstream 4815 true Chr05: 39683519-39688333 Phaseolus vulgaris
Phvul.005G170900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39687334-39688333 Phaseolus vulgaris
Phvul.005G170900 1.0kb downstream 1.0kb downstream 4815 true Chr05: 39682519-39687333 Phaseolus vulgaris
Phvul.005G170900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39682519-39683518 Phaseolus vulgaris
Phvul.005G170900 2.0kb upstream 2.0kb upstream 5815 true Chr05: 39683519-39689333 Phaseolus vulgaris
Phvul.005G170900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39687334-39689333 Phaseolus vulgaris
Phvul.005G170900 2.0kb downstream 2.0kb downstream 5815 true Chr05: 39681519-39687333 Phaseolus vulgaris
Phvul.005G170900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39681519-39683518 Phaseolus vulgaris
Phvul.005G170900 5.0kb upstream 5.0kb upstream 8815 true Chr05: 39683519-39692333 Phaseolus vulgaris
Phvul.005G170900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39687334-39692333 Phaseolus vulgaris
Phvul.005G170900 5.0kb downstream 5.0kb downstream 8815 true Chr05: 39678519-39687333 Phaseolus vulgaris
Phvul.005G170900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39678519-39683518 Phaseolus vulgaris
Phvul.005G170900 10.0kb upstream 10.0kb upstream 13815 true Chr05: 39683519-39697333 Phaseolus vulgaris
Phvul.005G170900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39687334-39697333 Phaseolus vulgaris
Phvul.005G170900 10.0kb downstream 10.0kb downstream 13815 true Chr05: 39673519-39687333 Phaseolus vulgaris
Phvul.005G170900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39673519-39683518 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310856 5265 Fabidae View MSA
124070426 5270 Rosid View MSA
123753240 5271 Pentapetalae View MSA
122795840 5272 Eudicot View MSA
122049622 5273 Angiosperm View MSA
121344376 5274 Embryophyte View MSA
123424016 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.9068 0.0 50.1928   High
cufflinks 2.8018 0.0 19.2684    
cufflinks 0.462231 0.0 7.20225 Low Low
cufflinks 5.1266 0.0 25.9771   High
cufflinks 1.11258 0.0 14.0607    
cufflinks 0.699453 0.0 11.4833    
cufflinks 0.751443 0.0 16.1992    
cufflinks 0.94137 0.0 18.053    
cufflinks 0.643296 0.0 13.7047    
cufflinks 1.23476 0.0 12.6251    
cufflinks 1.26962 0.0 19.4385    

0 Strain