Gene : Phvul.005G171000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31852:SF17 - EXPRESSED PROTEIN Genomic Order:  1602
Name:  ? Phvul.005G171000 Secondary Identifier:  ? PAC:37153283
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G171000 0.5kb upstream 0.5kb upstream 2195 true Chr05: 39686083-39688277 Phaseolus vulgaris
Phvul.005G171000 0.5kb upstream 0.5kb upstream 500 false Chr05: 39686083-39686582 Phaseolus vulgaris
Phvul.005G171000 0.5kb downstream 0.5kb downstream 2195 true Chr05: 39686583-39688777 Phaseolus vulgaris
Phvul.005G171000 0.5kb downstream 0.5kb downstream 500 false Chr05: 39688278-39688777 Phaseolus vulgaris
Phvul.005G171000 1.0kb upstream 1.0kb upstream 2695 true Chr05: 39685583-39688277 Phaseolus vulgaris
Phvul.005G171000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39685583-39686582 Phaseolus vulgaris
Phvul.005G171000 1.0kb downstream 1.0kb downstream 2695 true Chr05: 39686583-39689277 Phaseolus vulgaris
Phvul.005G171000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39688278-39689277 Phaseolus vulgaris
Phvul.005G171000 2.0kb upstream 2.0kb upstream 3695 true Chr05: 39684583-39688277 Phaseolus vulgaris
Phvul.005G171000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39684583-39686582 Phaseolus vulgaris
Phvul.005G171000 2.0kb downstream 2.0kb downstream 3695 true Chr05: 39686583-39690277 Phaseolus vulgaris
Phvul.005G171000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39688278-39690277 Phaseolus vulgaris
Phvul.005G171000 5.0kb upstream 5.0kb upstream 6695 true Chr05: 39681583-39688277 Phaseolus vulgaris
Phvul.005G171000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39681583-39686582 Phaseolus vulgaris
Phvul.005G171000 5.0kb downstream 5.0kb downstream 6695 true Chr05: 39686583-39693277 Phaseolus vulgaris
Phvul.005G171000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39688278-39693277 Phaseolus vulgaris
Phvul.005G171000 10.0kb upstream 10.0kb upstream 11695 true Chr05: 39676583-39688277 Phaseolus vulgaris
Phvul.005G171000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39676583-39686582 Phaseolus vulgaris
Phvul.005G171000 10.0kb downstream 10.0kb downstream 11695 true Chr05: 39686583-39698277 Phaseolus vulgaris
Phvul.005G171000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39688278-39698277 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308559 5265 Fabidae View MSA
124071575 5270 Rosid View MSA
123738145 5271 Pentapetalae View MSA
122793617 5272 Eudicot View MSA
122049008 5273 Angiosperm View MSA
121350992 5274 Embryophyte View MSA
123381962 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.63245 0.0 14.3198    
cufflinks 5.1124 0.0 17.2913    
cufflinks 1.11399 0.0 4.47196   Low
cufflinks 2.87766 0.0 12.3312    
cufflinks 4.86843 0.0 15.5081    
cufflinks 2.62568 0.0 9.07598    
cufflinks 5.26748 0.0 16.1367    
cufflinks 6.2067 0.0 18.8605   High
cufflinks 4.04226 0.0 12.8167    
cufflinks 3.26722 0.0 11.2553    
cufflinks 5.99393 0.0 18.48    

0 Strain