Gene : Phvul.005G161800 P. vulgaris v2.1
Defline:  (1 of 2) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  1514
Name:  ? Phvul.005G161800 Secondary Identifier:  ? PAC:37152212
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G161800 0.5kb upstream 0.5kb upstream 6476 true Chr05: 38972173-38978648 Phaseolus vulgaris
Phvul.005G161800 0.5kb upstream 0.5kb upstream 500 false Chr05: 38972173-38972672 Phaseolus vulgaris
Phvul.005G161800 0.5kb downstream 0.5kb downstream 6476 true Chr05: 38972673-38979148 Phaseolus vulgaris
Phvul.005G161800 0.5kb downstream 0.5kb downstream 500 false Chr05: 38978649-38979148 Phaseolus vulgaris
Phvul.005G161800 1.0kb upstream 1.0kb upstream 6976 true Chr05: 38971673-38978648 Phaseolus vulgaris
Phvul.005G161800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 38971673-38972672 Phaseolus vulgaris
Phvul.005G161800 1.0kb downstream 1.0kb downstream 6976 true Chr05: 38972673-38979648 Phaseolus vulgaris
Phvul.005G161800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 38978649-38979648 Phaseolus vulgaris
Phvul.005G161800 2.0kb upstream 2.0kb upstream 7976 true Chr05: 38970673-38978648 Phaseolus vulgaris
Phvul.005G161800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 38970673-38972672 Phaseolus vulgaris
Phvul.005G161800 2.0kb downstream 2.0kb downstream 7976 true Chr05: 38972673-38980648 Phaseolus vulgaris
Phvul.005G161800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 38978649-38980648 Phaseolus vulgaris
Phvul.005G161800 5.0kb upstream 5.0kb upstream 10976 true Chr05: 38967673-38978648 Phaseolus vulgaris
Phvul.005G161800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 38967673-38972672 Phaseolus vulgaris
Phvul.005G161800 5.0kb downstream 5.0kb downstream 10976 true Chr05: 38972673-38983648 Phaseolus vulgaris
Phvul.005G161800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 38978649-38983648 Phaseolus vulgaris
Phvul.005G161800 10.0kb upstream 10.0kb upstream 15976 true Chr05: 38962673-38978648 Phaseolus vulgaris
Phvul.005G161800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 38962673-38972672 Phaseolus vulgaris
Phvul.005G161800 10.0kb downstream 10.0kb downstream 15976 true Chr05: 38972673-38988648 Phaseolus vulgaris
Phvul.005G161800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 38978649-38988648 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305203 5265 Fabidae View MSA
124060880 5270 Rosid View MSA
123737477 5271 Pentapetalae View MSA
122788250 5272 Eudicot View MSA
122042152 5273 Angiosperm View MSA
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.05634 0.0 6.30901    
cufflinks 2.85171 0.0 8.44608    
cufflinks 10.4593 0.0 27.5224   High
cufflinks 1.50252 0.0 4.80779    
cufflinks 2.67086 0.0 7.99794    
cufflinks 12.3071 0.0 32.1414   High
cufflinks 1.57591 0.0 5.00329    
cufflinks 1.98279 0.0 6.11014    
cufflinks 1.42004 0.0 4.5676    
cufflinks 1.90878 0.0 5.92927    
cufflinks 1.85813 0.0 5.80989    

0 Strain