Gene : Phvul.005G160700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR27001:SF152 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMM17-RELATED Genomic Order:  1503
Name:  ? Phvul.005G160700 Secondary Identifier:  ? PAC:37152765
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G160700 0.5kb upstream 0.5kb upstream 6795 true Chr05: 38889002-38895796 Phaseolus vulgaris
Phvul.005G160700 0.5kb upstream 0.5kb upstream 500 false Chr05: 38895297-38895796 Phaseolus vulgaris
Phvul.005G160700 0.5kb downstream 0.5kb downstream 6795 true Chr05: 38888502-38895296 Phaseolus vulgaris
Phvul.005G160700 0.5kb downstream 0.5kb downstream 500 false Chr05: 38888502-38889001 Phaseolus vulgaris
Phvul.005G160700 1.0kb upstream 1.0kb upstream 7295 true Chr05: 38889002-38896296 Phaseolus vulgaris
Phvul.005G160700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 38895297-38896296 Phaseolus vulgaris
Phvul.005G160700 1.0kb downstream 1.0kb downstream 7295 true Chr05: 38888002-38895296 Phaseolus vulgaris
Phvul.005G160700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 38888002-38889001 Phaseolus vulgaris
Phvul.005G160700 2.0kb upstream 2.0kb upstream 8295 true Chr05: 38889002-38897296 Phaseolus vulgaris
Phvul.005G160700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 38895297-38897296 Phaseolus vulgaris
Phvul.005G160700 2.0kb downstream 2.0kb downstream 8295 true Chr05: 38887002-38895296 Phaseolus vulgaris
Phvul.005G160700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 38887002-38889001 Phaseolus vulgaris
Phvul.005G160700 5.0kb upstream 5.0kb upstream 11295 true Chr05: 38889002-38900296 Phaseolus vulgaris
Phvul.005G160700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 38895297-38900296 Phaseolus vulgaris
Phvul.005G160700 5.0kb downstream 5.0kb downstream 11295 true Chr05: 38884002-38895296 Phaseolus vulgaris
Phvul.005G160700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 38884002-38889001 Phaseolus vulgaris
Phvul.005G160700 10.0kb upstream 10.0kb upstream 16295 true Chr05: 38889002-38905296 Phaseolus vulgaris
Phvul.005G160700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 38895297-38905296 Phaseolus vulgaris
Phvul.005G160700 10.0kb downstream 10.0kb downstream 16295 true Chr05: 38879002-38895296 Phaseolus vulgaris
Phvul.005G160700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 38879002-38889001 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296344 5265 Fabidae View MSA
124066375 5270 Rosid View MSA
123738565 5271 Pentapetalae View MSA
122788767 5272 Eudicot View MSA
122047607 5273 Angiosperm View MSA
121351058 5274 Embryophyte View MSA
123381993 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.07288 0.0 3.39263   Low
cufflinks 8.60583 0.0 22.4354   High
cufflinks 1.20653 0.0 3.75701    
cufflinks 1.97921 0.0 5.88792    
cufflinks 3.96669 0.0 10.9665    
cufflinks 7.74172 0.0 20.2808   High
cufflinks 1.4112 0.0 4.33405    
cufflinks 2.24316 0.0 6.49759    
cufflinks 0.798066 0.0 2.61938   Low
cufflinks 7.37399 0.0 19.3708   High
cufflinks 4.06847 0.0 11.2209    

0 Strain