Gene : Phvul.007G279500 P. vulgaris v2.1
Defline:  (1 of 6) 2.3.1.119//2.3.1.199 - Very-long-chain 3-oxoacyl-CoA synthase / Very-long-chain beta-ketoacyl-CoA synthase Genomic Order:  2655
Name:  ? Phvul.007G279500 Secondary Identifier:  ? PAC:37164545
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5080 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6433 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6598 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7036 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7601 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7606 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7619 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G279500 0.5kb upstream 0.5kb upstream 3255 true Chr07: 39890399-39893653 Phaseolus vulgaris
Phvul.007G279500 0.5kb upstream 0.5kb upstream 500 false Chr07: 39893154-39893653 Phaseolus vulgaris
Phvul.007G279500 0.5kb downstream 0.5kb downstream 3255 true Chr07: 39889899-39893153 Phaseolus vulgaris
Phvul.007G279500 0.5kb downstream 0.5kb downstream 500 false Chr07: 39889899-39890398 Phaseolus vulgaris
Phvul.007G279500 1.0kb upstream 1.0kb upstream 3755 true Chr07: 39890399-39894153 Phaseolus vulgaris
Phvul.007G279500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 39893154-39894153 Phaseolus vulgaris
Phvul.007G279500 1.0kb downstream 1.0kb downstream 3755 true Chr07: 39889399-39893153 Phaseolus vulgaris
Phvul.007G279500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 39889399-39890398 Phaseolus vulgaris
Phvul.007G279500 2.0kb upstream 2.0kb upstream 4755 true Chr07: 39890399-39895153 Phaseolus vulgaris
Phvul.007G279500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 39893154-39895153 Phaseolus vulgaris
Phvul.007G279500 2.0kb downstream 2.0kb downstream 4755 true Chr07: 39888399-39893153 Phaseolus vulgaris
Phvul.007G279500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 39888399-39890398 Phaseolus vulgaris
Phvul.007G279500 5.0kb upstream 5.0kb upstream 7755 true Chr07: 39890399-39898153 Phaseolus vulgaris
Phvul.007G279500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 39893154-39898153 Phaseolus vulgaris
Phvul.007G279500 5.0kb downstream 5.0kb downstream 7755 true Chr07: 39885399-39893153 Phaseolus vulgaris
Phvul.007G279500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 39885399-39890398 Phaseolus vulgaris
Phvul.007G279500 10.0kb upstream 10.0kb upstream 12755 true Chr07: 39890399-39903153 Phaseolus vulgaris
Phvul.007G279500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 39893154-39903153 Phaseolus vulgaris
Phvul.007G279500 10.0kb downstream 10.0kb downstream 12755 true Chr07: 39880399-39893153 Phaseolus vulgaris
Phvul.007G279500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 39880399-39890398 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310210 5265 Fabidae View MSA
124070809 5270 Rosid View MSA
123743172 5271 Pentapetalae View MSA
122795166 5272 Eudicot View MSA
122051961 5273 Angiosperm View MSA
121349296 5274 Embryophyte View MSA
123425974 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.77334 0.0 15.9741    
cufflinks 2.00649 0.0 6.18648   Low
cufflinks 9.88823 0.0 26.1241    
cufflinks 18.5841 0.0 48.0633   High
cufflinks 9.34633 0.0 24.8228    
cufflinks 5.72855 0.0 15.8072    
cufflinks 3.83272 0.0 10.9473    
cufflinks 2.18869 0.0 6.67854   Low
cufflinks 1.34337 0.0 4.32099   Low
cufflinks 12.0769 0.0 31.5945    
cufflinks 10.6261 0.0 27.9674    

0 Strain