Gene : Phvul.005G137300 P. vulgaris v2.1
Defline:  (1 of 3) PTHR31301:SF14 - LOB DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  1392
Name:  ? Phvul.005G137300 Secondary Identifier:  ? PAC:37153055
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G137300 0.5kb upstream 0.5kb upstream 2354 true Chr05: 37947461-37949814 Phaseolus vulgaris
Phvul.005G137300 0.5kb upstream 0.5kb upstream 500 false Chr05: 37949315-37949814 Phaseolus vulgaris
Phvul.005G137300 0.5kb downstream 0.5kb downstream 2354 true Chr05: 37946961-37949314 Phaseolus vulgaris
Phvul.005G137300 0.5kb downstream 0.5kb downstream 500 false Chr05: 37946961-37947460 Phaseolus vulgaris
Phvul.005G137300 1.0kb upstream 1.0kb upstream 2854 true Chr05: 37947461-37950314 Phaseolus vulgaris
Phvul.005G137300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37949315-37950314 Phaseolus vulgaris
Phvul.005G137300 1.0kb downstream 1.0kb downstream 2854 true Chr05: 37946461-37949314 Phaseolus vulgaris
Phvul.005G137300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37946461-37947460 Phaseolus vulgaris
Phvul.005G137300 2.0kb upstream 2.0kb upstream 3854 true Chr05: 37947461-37951314 Phaseolus vulgaris
Phvul.005G137300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37949315-37951314 Phaseolus vulgaris
Phvul.005G137300 2.0kb downstream 2.0kb downstream 3854 true Chr05: 37945461-37949314 Phaseolus vulgaris
Phvul.005G137300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37945461-37947460 Phaseolus vulgaris
Phvul.005G137300 5.0kb upstream 5.0kb upstream 6854 true Chr05: 37947461-37954314 Phaseolus vulgaris
Phvul.005G137300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37949315-37954314 Phaseolus vulgaris
Phvul.005G137300 5.0kb downstream 5.0kb downstream 6854 true Chr05: 37942461-37949314 Phaseolus vulgaris
Phvul.005G137300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37942461-37947460 Phaseolus vulgaris
Phvul.005G137300 10.0kb upstream 10.0kb upstream 11854 true Chr05: 37947461-37959314 Phaseolus vulgaris
Phvul.005G137300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37949315-37959314 Phaseolus vulgaris
Phvul.005G137300 10.0kb downstream 10.0kb downstream 11854 true Chr05: 37937461-37949314 Phaseolus vulgaris
Phvul.005G137300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37937461-37947460 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301117 5265 Fabidae View MSA
124072229 5270 Rosid View MSA
123742665 5271 Pentapetalae View MSA
122789908 5272 Eudicot View MSA
122042687 5273 Angiosperm View MSA
121310001 5274 Embryophyte View MSA
123347609 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.92724 0.0 12.3944   High
cufflinks 3.38563 0.0 10.8547    
cufflinks 0.173289 0.0 0.727585 Low Low
cufflinks 3.98841 0.0 12.5065   High
cufflinks 1.14679 0.0 4.1412    
cufflinks 1.86647 0.0 6.3938    
cufflinks 0.483293 0.0 1.86968 Low  
cufflinks 0.504007 0.0 1.94554    
cufflinks 0.0778969 0.0 0.351976 Low Low
cufflinks 0.146455 0.0 0.627613 Low Low
cufflinks 3.27038 0.0 10.5689    

0 Strain